Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1946 ATGACCAAGTCTATGCAATCATGTGTAAAAATGCAAATGTTCTCTCTTCTCACCTTCTTCCTCTTTTTCACCTATGCAAACTCTCAGTCTCAGTCCCTTCTGTATAATCAAGAGCATACAGTTCTATTGAAGATAAAGAAATACCTGCAAAACCCATCATTCCTCAGTCACTGGACACCATCAAACTCTTCACACTGCTTTTGGCCAGAAATCACCTGCACCAATGGCTCAGTCACAGCACTGGCCATGACCAACACCAACATCATTCAAACATTACCACCTTTCCTATGTGACCTCACAAACCTCACATACATAGATTTTCAATGGAATTACATCCCTGGGGAGTTTCCAACTTCCCTCTACAACTGCTCCAAACTTGAGCACCTTGATCTCTCCCAGAACTACTTTGTTGGTAAGATTCCTGATGACATTGACCGCTTGTCTAGCCTACGTTTCCTCAGCCTTGGTGGCAACAACTTTTGTGGTGATATTCCTGTGAGCATTGGGAGGTTGAGGGAGCTAACAAATCTTCAACTGTATACGTGTCTTTTCAATGGTACTTTCCCTGCTGATATTGGTAACTTGTCCAACCTTGAGACCTTGTTGATGTTCTCAAACAGCATGCTCCCTCAAACAAAGTTGCCATCAAGCTTGACCAAGTTGAAAAAGTTGAAGGTCTTTCATATGGCTGACTCAAACTTGGTTGGGGAAATCCCTGAAACTATAGGAGAAATGGTGGCATTGGAGGAATTAGGTTTATCAAGAAACTATTTAAGTGGACAAATTCCAGATGGTTTGTTCACTCTGAAATATCTGAGCACACTTTCTCTTTACAAAAACAACCTTTCTGGGGAGATACCTGGAGTAGTTGAAGCATTCAACTTAACACTCCTTGATCTTTCACAGAATAATCTCACTGGGAAGATACCAGATGATCTGGGAAAGCTGAAAAATCTAACCTTCTTGAATTTGGCTATGAATCAATTATCTGGGGAGGTACCAGAAAGCATTGGTCATCTGCCAGCTCTAACTGATTTTGAAGTTTTTCTCAACAATTTATCAGGTGCTCTTCCTCTAGATTTCGGCCGGTTCTCGAAGCTTGAAACGTTTCAGGTTGCATCTAATAGTTTCACAGGAAGGCTGCCAGAGAACTTGTGCTACTACCAAAGGTTAGTTGGTTTAACTGCTTATGACAATAAACTGAGTGGGGAGTTGCCAGAGTCTTTAGGTAGTTGCAGTAGCCTGGAGTATCTGAGAGTTGAGAATAATGAGTTTTCTGGAAACATTCCTAGTGGTCTATGGACATCTATGAACTTGTCAACATTTATGATAAGCCAGAACAAGTTCACTGGGGGGCTTCCTGAAAGATTGCCTAGGAATCTTTCAAATCTGGTCATTAGTTATAATCAATTTTCTGGTAGAATTCCAGATGGAGTGTCTTCATGGAAGAAAGTGGTGGTGTTCAATGCTAGTCACAACCTATTCAATGGAAGCATTCCGCAAGAGCTAACATCTCTTCCCCACCTAACAACTCTTCTGCTTGATCATAACCAGTTTACTGGTCCACTTCCATCAGATATAATATCATGGAAGTCCCTAATAAATCTCAATTTGAGCCACAATCAAATCTCTGGTAAAATTCCTGATGCAATTGGTCAGTTACCTACCCTTAACATATTGGACTTGTCAGAAAACAAAATCTCTGGCCATATTCCACTTCAACTAGCCCTTAAGAGACTCACAAATCTCAATCTGTCATCCAATCATTTGATGGGGAGGATTCCAAGTGAATTTGAAAACCTTGTCTATGACAGAAGTTTTTTGAATAATTCTGGTCTTTGTGCGAGTACCCCAGTACTAAATCTTGCCTTGTGCAATTCTGGCCCTAAAAGGGTGAGGAGTGGCTCATCTGTGCCTCGCTCTATGATCATATGTGTGGTGGTATTAGCCTCCTTACTGGTTTTCTTGTCATCATTCATGATGATCAGAATTTACAGAAAAAGAAAGCAAGACCTGAAAAGGTCTTGGAAGCTCACTTCCTTTCAGAGGCTGAGTTTCTCAAAATCAAACATTGTGTCATCAATGAAAGAACATAATATCATTGGCAGTGGTGGGTTTGGTGCAGTATACCGCGTTGCTGTCGATGGTTTAGGCTATGTAGCCGTGAAAAAGATATATAGTAGCAGAAAACTAGAGCAGAAGCTTGTGAATTCATTTCTCGCGGAAGTTGAAATCCTGAGCAATATTCGTCATAACAATATTGTGAAGTTGCAGTGCTGTATCTCCAGTGAGGAATCTCTGCTCCTTGTCTACGACTATCTAGAAAATCTTAGCCTCGATAGGTGGCTGCACAAGAAAAGTAAACCACCAACTGTGTCAGGTTCAGTCCAAAATAACATCATTGATTGGCCAAGAAGATTGCATATAGCCATTGGAGTTGCGCAAGGTTTGTGCTACATGCATCATGATTGCTCACCGCCAGTTGTTCATCGTGATTTGAAACCAAGTAACATTCTGTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTTGCCATGATGTTGGTCAAGCCAGAAGAACTTGCTACCATGTCAGCTGTGGCCGGCACATTTGGCTATATTGCTCCAGAATATGCTCTAACAATACGAGTCAATGAGAAGATAGATGTCTACAGCTTTGGGGTTATCCTACTTGAACTAACAACTGGAAAAGAAGCTAATCATGGAGATGAATACTCATCTCTTGCTGAATGGGCACGGCGCCACATTCAGATAGGAAGCAATATAGAAGATCTTCTAGTTGAAGAAATTGCGGAACCTAGTTACTTGGATGAAATGTGTAGCATCTTCAAACTTGGGGTCATGTGCACTGCAACACTGCCAGGTAGCAGACCTTCCATGAAGGAGGTCTTGAAGGTATTGCTCAGCTACAGCGATCCGCGTGCCAATGGAGAGAAGAAAGTTGGTTTCTATGATGTTGTTCCACTTCTTCAGAATCCAAAATGGGAAAAGAAGGTGGAATATTGA 3033 0.4138 MTKSMQSCVKMQMFSLLTFFLFFTYANSQSQSLLYNQEHTVLLKIKKYLQNPSFLSHWTPSNSSHCFWPEITCTNGSVTALAMTNTNIIQTLPPFLCDLTNLTYIDFQWNYIPGEFPTSLYNCSKLEHLDLSQNYFVGKIPDDIDRLSSLRFLSLGGNNFCGDIPVSIGRLRELTNLQLYTCLFNGTFPADIGNLSNLETLLMFSNSMLPQTKLPSSLTKLKKLKVFHMADSNLVGEIPETIGEMVALEELGLSRNYLSGQIPDGLFTLKYLSTLSLYKNNLSGEIPGVVEAFNLTLLDLSQNNLTGKIPDDLGKLKNLTFLNLAMNQLSGEVPESIGHLPALTDFEVFLNNLSGALPLDFGRFSKLETFQVASNSFTGRLPENLCYYQRLVGLTAYDNKLSGELPESLGSCSSLEYLRVENNEFSGNIPSGLWTSMNLSTFMISQNKFTGGLPERLPRNLSNLVISYNQFSGRIPDGVSSWKKVVVFNASHNLFNGSIPQELTSLPHLTTLLLDHNQFTGPLPSDIISWKSLINLNLSHNQISGKIPDAIGQLPTLNILDLSENKISGHIPLQLALKRLTNLNLSSNHLMGRIPSEFENLVYDRSFLNNSGLCASTPVLNLALCNSGPKRVRSGSSVPRSMIICVVVLASLLVFLSSFMMIRIYRKRKQDLKRSWKLTSFQRLSFSKSNIVSSMKEHNIIGSGGFGAVYRVAVDGLGYVAVKKIYSSRKLEQKLVNSFLAEVEILSNIRHNNIVKLQCCISSEESLLLVYDYLENLSLDRWLHKKSKPPTVSGSVQNNIIDWPRRLHIAIGVAQGLCYMHHDCSPPVVHRDLKPSNILLDSQFNAKVADFGLAMMLVKPEELATMSAVAGTFGYIAPEYALTIRVNEKIDVYSFGVILLELTTGKEANHGDEYSSLAEWARRHIQIGSNIEDLLVEEIAEPSYLDEMCSIFKLGVMCTATLPGSRPSMKEVLKVLLSYSDPRANGEKKVGFYDVVPLLQNPKWEKKVEY* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1946 1010 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Lja2g1946 1010 Gene3D Transferase(Phosphotransferase) domain 1 774 991 - -
Lja2g1946 1010 ProSiteProfiles Leucine-rich repeat profile. 294 317 IPR001611 GO:0005515
Lja2g1946 1010 Pfam Protein kinase domain 697 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1946 1010 Gene3D Ribonuclease Inhibitor 204 347 IPR032675 -
Lja2g1946 1010 SMART serkin_6 695 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1946 1010 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Lja2g1946 1010 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Lja2g1946 1010 Pfam Leucine Rich Repeat 579 601 IPR001611 GO:0005515
Lja2g1946 1010 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515
Lja2g1946 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 14 1003 - -
Lja2g1946 1010 SMART LRR_typ_2 245 269 IPR003591 -
Lja2g1946 1010 SMART LRR_typ_2 506 530 IPR003591 -
Lja2g1946 1010 SMART LRR_typ_2 147 171 IPR003591 -
Lja2g1946 1010 SMART LRR_typ_2 577 600 IPR003591 -
Lja2g1946 1010 SMART LRR_typ_2 316 340 IPR003591 -
Lja2g1946 1010 SUPERFAMILY L domain-like 213 600 - -
Lja2g1946 1010 Gene3D Ribonuclease Inhibitor 348 622 IPR032675 -
Lja2g1946 1010 PRINTS Leucine-rich repeat signature 554 567 - -
Lja2g1946 1010 PRINTS Leucine-rich repeat signature 295 308 - -
Lja2g1946 1010 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 14 1003 - -
Lja2g1946 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Lja2g1946 1010 Gene3D Phosphorylase Kinase; domain 1 666 773 - -
Lja2g1946 1010 CDD STKc_IRAK 701 976 - -
Lja2g1946 1010 SUPERFAMILY L domain-like 36 289 - -
Lja2g1946 1010 SUPERFAMILY Protein kinase-like (PK-like) 688 976 IPR011009 -
Lja2g1946 1010 ProSiteProfiles Leucine-rich repeat profile. 532 554 IPR001611 GO:0005515
Lja2g1946 1010 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Lja2g1946 1010 ProSiteProfiles Protein kinase domain profile. 695 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1946 Lja-Chr2 20447495 20451160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1946 38 976 Receptor kinase-like Gene Family AT5G25930 51.742 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja2g1946 Pkinase 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1946 - - gmx:100785907 1530