Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1942 ATGGGAAAAGTCACAAGGTGGCTCAAACGCTTGTTTGGGATAAAAGAAAACAGACAACACAAACAAAGCTCAAACTCTAAAGACCCCAAGAACATGAAAAATGGTTCTTTTTCTGTTTCTGAGAGTAATTCTAGACTCTTGTTTCACACCTCAGCTACAATTCCACCTAACATTTCTCCAGCAGAAGCTTCTTGGTTACAATCTTTCCACACTGAAAGGGAAAAGGAGCAGAACAAGCACGCCATTGCGGTGGCTGCAGCCACTGCAGCAGCAGCTGATGCTGCCGTGGCTGCTGCACAAGCTGCAGTGGCGGTGGTTAGGCTCACAAGTCATGGAAGGGGAACCATGTTTGGTGGTGGTGGTCATGAGAAGATGTGTGCTGCTGTTAAGATTCAAACATTGTTCAGGGGATACCTGGCAAAGAAAGCACTGAGAGCCTTAAAAGGATTGGTGAAGTTACAAGCACTTGTGAGAGGGTATTTAGTGAGGAAGCAAGCAAAAGAAACTCTGCATAGTATGCAAGCTCTTGTTAGAGCTCAATCTACTGTTCTGTCTCAGAAATCTTGCAGGCTCATGAACACAAAGAATGAAGCATGTAGACTTCAAAACCGAGCACGAAGATCCATGGAGAGATTTGATGACACTAGGAGTGAGTGCACAGGTCCAATCCACAGTAGAAGATTGTCATCTTGTTTTGATGCTACAATTAACAGTATTGATGGGAGCCCCAAAATAGTGGAAGTGGATTCTTTCAGTGGCAGGTCTAAGTCAAGATCTCGCAGAACTAACATGTCAAAATCAGATTTTGGTGATGACCCATCATTCCAAGCACTTACCTCTTCCCTTCCAATATCCATACCAGAACAGAGGAATTCCCATGACTCTGATTGGGGGTTAACAGGGGAAGAAGAATGCAGGTTCTCAACAACAGCACATAGCACTCCACGGTTCACACATTCTTGTAGTTGTAGTGGCACACCAAAGAGAGATAACAACTATTTCTTAAGGAAATATGGGAATTTTCCCAATTACATGGCAAGTACTCAGTCTTTCAAGGCCAAATTGAGGTCTCATAGTGCTCCAAGGCAAAGGCCAGAACCAGGTCCAAAGAAGAGACTTTCCCTCAGTGAAATGATGATGGAATCTAGGAACAGTTTAAGTGGGGTTAGAATGCAGCAGAGATCTTCTTGTTCACAGGTTCAGGAAGTCACTGATTTTAAGAATGCTGTAATGGGTAACCTTCAGAAATCCACAGGATCTTGA 1263 0.4371 MGKVTRWLKRLFGIKENRQHKQSSNSKDPKNMKNGSFSVSESNSRLLFHTSATIPPNISPAEASWLQSFHTEREKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGGHEKMCAAVKIQTLFRGYLAKKALRALKGLVKLQALVRGYLVRKQAKETLHSMQALVRAQSTVLSQKSCRLMNTKNEACRLQNRARRSMERFDDTRSECTGPIHSRRLSSCFDATINSIDGSPKIVEVDSFSGRSKSRSRRTNMSKSDFGDDPSFQALTSSLPISIPEQRNSHDSDWGLTGEEECRFSTTAHSTPRFTHSCSCSGTPKRDNNYFLRKYGNFPNYMASTQSFKAKLRSHSAPRQRPEPGPKKRLSLSEMMMESRNSLSGVRMQQRSSCSQVQEVTDFKNAVMGNLQKSTGS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1942 420 MobiDBLite consensus disorder prediction 251 267 - -
Lja2g1942 420 MobiDBLite consensus disorder prediction 15 38 - -
Lja2g1942 420 Pfam IQ calmodulin-binding motif 126 145 IPR000048 GO:0005515
Lja2g1942 420 Pfam IQ calmodulin-binding motif 151 167 IPR000048 GO:0005515
Lja2g1942 420 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 418 - -
Lja2g1942 420 ProSiteProfiles IQ motif profile. 127 152 IPR000048 GO:0005515
Lja2g1942 420 Pfam Protein of unknown function (DUF4005) 314 398 IPR025064 -
Lja2g1942 420 MobiDBLite consensus disorder prediction 250 296 - -
Lja2g1942 420 PANTHER IQ-DOMAIN 5-RELATED 1 418 - -
Lja2g1942 420 MobiDBLite consensus disorder prediction 268 294 - -
Lja2g1942 420 SMART iq_5 123 145 IPR000048 GO:0005515
Lja2g1942 420 SMART iq_5 146 167 IPR000048 GO:0005515
Lja2g1942 420 Gene3D - 124 176 - -
Lja2g1942 420 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1942 Lja-Chr2 20358457 20360532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1942 1 407 IQD Protein Family AT3G16490 45.861 4.54e-80 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1942 - - gmx:100788710 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1942 2 20358457 20360532 Lja2g1942 2 20358457 20360532 ECH