Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1941 ATGTCAAACTTGCATTGCATTTTCAGCTTGTTAGCAGTTCTTCTTCTTCTGATGCAAAATCCCAGTGGAATTCACTGCCATACCAAGGGAATTAGGCCACGACGTTCTGTAGGGAATGGGCTATCGAACAATATGTCTAGAGTACTGGAATCAGAAAAGCAATTCATGAAATGGGTTGATTTTGTTGGTAGCCTCAAACATACAGTTTTTAAGGCTGCAAAGAATAAGCTGTTTGCTTCTTACACTTTGTACGTTGATAAGAATCCTGCTGCTGGAGATTTTACATCAATTCAAGAAGCCATTGATTCCCTTCCATCCATCAATACTGTCAGAGTGGTCATCAAGGTCCATGCAGGGGTTTACTCGGAGAAAGTTTACATTCCCCCTTTGAAATCTTTCATAACCATAGAAGGAGATGGTGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACCAGGCCCTCGAGGGCAGCCACTTGGAACATATGGCTCAGCAACTTTTGCAGTGAACTCACTCTATTTTATTGCCAAGAACATCACATTCAAAAACACTACCCCTGTTCCTGCACCAGGAGCAATGGGAAAGCAGGCAGTAGCATTCAGGATTTCAGCAGACACAGCTGCATTCCTAGGTTGCAAATTCTTAGGAGCACAGGACACACTTTATGATCATTTGGGCAGGCATTATTATAAGGATTGTTACATTGAGGGTTCTGTTGATTTCATATTTGGCAATGCTCTCTCACTCTATGAGGGATGTGAGGTGCATGCCATAGCACCAAATACAGGCGCACTAACAGCTCAAGGAAGGAGCAGGATGACGGAGGACACGGGGTTCTCATTTGTGAACTGTAAGGTCACGGGGTCAGGGGCACTGTACCTTGGAAGGGCTTGGGGTCCCTTTTCAAGAGTGGTCTTTGCTTATACCTATATGGACAACATCATCATTCCCAAAGGCTGGTATAATTGGGGTGACCCAAACCGTGAAATGACTGTGTTTTATGGACAGTACAAATGCACGGGACCTGGAGCAAGCTTTGCAGGGAGAGTCTCATGGGCAAGAGAACTCACTGATGAGGAAGCTGGACCTTTTCTTTCACTTAGTTTTATTGATGGGCCTGAATGGGTCAAATTTTAG 1146 0.4433 MSNLHCIFSLLAVLLLLMQNPSGIHCHTKGIRPRRSVGNGLSNNMSRVLESEKQFMKWVDFVGSLKHTVFKAAKNKLFASYTLYVDKNPAAGDFTSIQEAIDSLPSINTVRVVIKVHAGVYSEKVYIPPLKSFITIEGDGADKTIVQWGDTAQTPGPRGQPLGTYGSATFAVNSLYFIAKNITFKNTTPVPAPGAMGKQAVAFRISADTAAFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCEVHAIAPNTGALTAQGRSRMTEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWARELTDEEAGPFLSLSFIDGPEWVKF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1941 381 PANTHER PECTINESTERASE 10 380 - -
Lja2g1941 381 SUPERFAMILY Pectin lyase-like 79 380 IPR011050 -
Lja2g1941 381 Pfam Pectinesterase 91 375 IPR000070 GO:0030599|GO:0042545
Lja2g1941 381 Gene3D - 78 381 IPR012334 -
Lja2g1941 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 380 - -
Lja2g1941 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1941 Lja-Chr2 20351650 20354949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1941 10 379 Carbohydrate Esterase AT5G47500 44.744 4.42e-105 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1941 K01051 - gmx:100817924 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1941 2 20351650 20354949 Lja2g1941 2 20351650 20354949 ECH