Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1923 ATGGAGAAGAGCTGGATTCTGGCTTTTCTCCTCCTGGTCCTCCATTTAGGCACAGCAAAAGCTGCCATTGGTGTCGGAGGCGGTGTTGGTGTAGGATTTGGTATTGGCAATGATGGTGATGGTGATGGTGGTGGTGGCAGTGGTGGAATGGTTTGGGTTGGTGGAGGGATCAACACTCCAAACCCAAACCCCTCAGGATCTTCAGTGTCAAAGGTGAATGCAGCTTACACAGCTCTTCAGGCCTGGAAATCTGCAATTACTGATGATCCACTGAAGATTTTAGTTAACTGGGTTGGTTCTGATGTGTGTTCTTACAAAGGAGTCTTCTGCAGCTCAAATTCTCAAGCTGAAATGGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTCAAAGGAACTCTGGTCAAAGAGCTATCTTTACTCAGTGACATGTCTCTTCTCCACCTCAACAGTAACAGATTTACTGGCACTGTTCCAGATACATTCAAGGACCTCATGTCTCTGGAAGAGTTAGACCTCAGCAACAACCAGCTTTCAGGTCCTTTCCCTGATGTTACTCTGTACATACCAAGCCTCATCTACTTGGACCTCAGATTCAACTCCTTCTCAGGGTCCATCCCTCAGGAGCTTTTCAACAAGAACCTGGATGCAATTTTTCTCAACAACAATCAGTTTGAAGGTGAGATTCCCCAGAGTTTGGGCAACTCCCCTGCCTCTGTGATCAATTTAGCGAACAACAAGTTGAGTGGGAGCATACCAGCAAGTTTTGGCTTCACGGGTTCTAAGATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACAGGTTGCATTCCTGAAGGAGTGGGGCTTTTCACTGAGATGCAGGTTCTGGATGTGAGCTTCAATGCACTCATGGGTCATTTGCCAGACACACTGTCTTGCCTGGAGGAAATAGAAGTCTTGAATTTGGCACATAATCAGCTTTCTGGGGAGGTGTCAGATATAATCTGCTCTCTGAGAAGCATTGCAAATCTAACAGTTTCATTCAATTTCTTTTCTGGGTTCAGCCAGCAATGCTCAAAACTTTCCTTTAGGAATGTGGGTTTTGATTTCTCACTTAACTGCATTCCTGGGAGGGATTTGCAAAGACCTCAACCTGAGTGTTCTGTGATCCCAGGAGGTAGCTTAAGTTGTCTCAGACTCCCTACACCAAAGCCTGTTATTTGTGGTTCTTTATCTGTAAGTAAATTTAAGAAAACTGATTCCAATTCACCATCTCCTTGA 1263 0.4473 MEKSWILAFLLLVLHLGTAKAAIGVGGGVGVGFGIGNDGDGDGGGGSGGMVWVGGGINTPNPNPSGSSVSKVNAAYTALQAWKSAITDDPLKILVNWVGSDVCSYKGVFCSSNSQAEMVVAGIDLNHANLKGTLVKELSLLSDMSLLHLNSNRFTGTVPDTFKDLMSLEELDLSNNQLSGPFPDVTLYIPSLIYLDLRFNSFSGSIPQELFNKNLDAIFLNNNQFEGEIPQSLGNSPASVINLANNKLSGSIPASFGFTGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSFNFFSGFSQQCSKLSFRNVGFDFSLNCIPGRDLQRPQPECSVIPGGSLSCLRLPTPKPVICGSLSVSKFKKTDSNSPSP* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1923 420 PRINTS Leucine-rich repeat signature 168 181 - -
Lja2g1923 420 PRINTS Leucine-rich repeat signature 308 321 - -
Lja2g1923 420 Gene3D Ribonuclease Inhibitor 73 236 IPR032675 -
Lja2g1923 420 Pfam Leucine rich repeat N-terminal domain 73 111 IPR013210 -
Lja2g1923 420 PANTHER LRR/EXTENSIN 1 420 - -
Lja2g1923 420 Pfam Leucine rich repeat 146 201 IPR001611 GO:0005515
Lja2g1923 420 Gene3D Ribonuclease Inhibitor 237 359 IPR032675 -
Lja2g1923 420 ProSiteProfiles Leucine-rich repeat profile. 167 188 IPR001611 GO:0005515
Lja2g1923 420 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 420 - -
Lja2g1923 420 SUPERFAMILY L domain-like 76 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1923 Lja-Chr2 20191121 20192749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1923 42 393 Leucine-rich Repeat extension Gene Families AT3G24480 48.333 1.42e-108 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1923 - - gmx:100775544 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1923 2 20191121 20192749 Lja2g1923 2 20191121 20192749 ECH