LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g1921	ATGAATAAGATGAACAACTTGAGTTCTGTAAGCAGCTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGGGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGAAAGCGGGATTGGCTAGGTCTGCCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTAATAGAGCATCTTGAAGCCAAAGTGGAGGCAAGGAACAACATGAGATCACACCCTTTGATTGATGAGTTCATCCCCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGGGATGGCTTGAGCAAGCACTTCTTCCACAGACCTTCAAAGGCATACACAACAGGCACAAGAAAGAGAAGAAAGATCCAAAATGAATGTGACTTGCAAGGTGGAGAAACCAGATGGCACAAGACAGGTAAGACCAGGCCAGTGATGATGAATGGGAAACAAAAAGGCTGCAAGAAAATCCTTGTCCTCTACACCAACTTTGGGAAAAACAGAAAGCCTGAGAAGACCAACTGGGTGATGCATCAGTACCATCTTGGCCAGCATGAGGAGGAGAGAGAAGGGGAGCTTGTGGTGTCAAAGATATTTTATCAAACACAGCCAAGGCAATGTAACTGGTCAGATAGGAGTGCCTGCACAACAGGTGAAGGAAGTGGGGAATTGCCAAATGGTGGAAGAAGAGACAGTGGAAGTGGGAGTTGCTCTTCCAAGGAAATTGTTCCTACTCACAGAGATGAAATGACTTCTGTTATTGTTAGTGGTGTTAATCCAATGACAGGCTTCACTCATGCATTGGACATTCAACAACAGCTGAAATCTGATCATTTCAGCTTCATCCCTTTCAGGAAAAGCTTTGATCATGAGGTTGGAATAGTAGAGGCTTCAACAGCAAGGGAAGTGCAAGCATCAGGCTCATGCGAAGAGGTGCATGAACGGCATCGACAACATGTAACTCATCATCATCAACAACAACAACAGCAACAACAACAACAACATGTAACTCATCATCATCAACAACAACAGCAGCAGCAGCAACATCACCATCAGATTGCAAACTCGGCTTTTCATATCAGTAGGCCTTCACATCCCATCTCCACCATAATCTCTCCGCTTCCAGCTCCACTACACCACACGTCCATCATCCTCGACGAAAACTCCTACCATGTTAATAGAGTAATGCTCCAAAACGATAATTTTCAGCAGCAACAGCAGCAACAGCATCATAAGCTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAAGTTCAACTGATATCAAACCGGGGTCAACTATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG	1425	0.454	MNKMNNLSSVSSSDLIDAKLEEHQLGGSKQCPGCGHKFEGKRDWLGLPAGVKFDPTDQELIEHLEAKVEARNNMRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMMNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEREGELVVSKIFYQTQPRQCNWSDRSACTTGEGSGELPNGGRRDSGSGSCSSKEIVPTHRDEMTSVIVSGVNPMTGFTHALDIQQQLKSDHFSFIPFRKSFDHEVGIVEASTAREVQASGSCEEVHERHRQHVTHHHQQQQQQQQQQHVTHHHQQQQQQQQHHHQIANSAFHISRPSHPISTIISPLPAPLHHTSIILDENSYHVNRVMLQNDNFQQQQQQQHHKLGGRSASGLEELIMGCTSSSTDIKPGSTITNPQEAEWLKYSSYWPDPDNPDHHG*	475

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja2g1921	474	ProSiteProfiles	NAC domain profile.	47	209	IPR003441	GO:0003677\|GO:0006355
Lja2g1921	474	Gene3D	NAC domain	56	213	IPR036093	GO:0003677\|GO:0006355
Lja2g1921	474	MobiDBLite	consensus disorder prediction	332	361	-	-
Lja2g1921	474	SUPERFAMILY	NAC domain	42	209	IPR036093	GO:0003677\|GO:0006355
Lja2g1921	474	MobiDBLite	consensus disorder prediction	219	253	-	-
Lja2g1921	474	Pfam	No apical meristem (NAM) protein	48	190	IPR003441	GO:0003677\|GO:0006355
Lja2g1921	474	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 75	2	448	-	-
Lja2g1921	474	MobiDBLite	consensus disorder prediction	314	361	-	-
Lja2g1921	474	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 73	2	448	IPR044799	GO:0003700

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g1921	Lja-Chr2	20092394	20097884	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g1921	11	471	NAC Transcription Factor Family	AT5G56620	50.620	1.32e-132	388

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Lja2g1921		NAM	2.4e-23	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g1921	-		-	gmx:100795246	747.273

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g1921	2	20092394	20097884	Lja2g1921	2	20092394	20097884	ECH

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