Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1921 ATGAATAAGATGAACAACTTGAGTTCTGTAAGCAGCTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGGGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGAAAGCGGGATTGGCTAGGTCTGCCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTAATAGAGCATCTTGAAGCCAAAGTGGAGGCAAGGAACAACATGAGATCACACCCTTTGATTGATGAGTTCATCCCCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGGGATGGCTTGAGCAAGCACTTCTTCCACAGACCTTCAAAGGCATACACAACAGGCACAAGAAAGAGAAGAAAGATCCAAAATGAATGTGACTTGCAAGGTGGAGAAACCAGATGGCACAAGACAGGTAAGACCAGGCCAGTGATGATGAATGGGAAACAAAAAGGCTGCAAGAAAATCCTTGTCCTCTACACCAACTTTGGGAAAAACAGAAAGCCTGAGAAGACCAACTGGGTGATGCATCAGTACCATCTTGGCCAGCATGAGGAGGAGAGAGAAGGGGAGCTTGTGGTGTCAAAGATATTTTATCAAACACAGCCAAGGCAATGTAACTGGTCAGATAGGAGTGCCTGCACAACAGGTGAAGGAAGTGGGGAATTGCCAAATGGTGGAAGAAGAGACAGTGGAAGTGGGAGTTGCTCTTCCAAGGAAATTGTTCCTACTCACAGAGATGAAATGACTTCTGTTATTGTTAGTGGTGTTAATCCAATGACAGGCTTCACTCATGCATTGGACATTCAACAACAGCTGAAATCTGATCATTTCAGCTTCATCCCTTTCAGGAAAAGCTTTGATCATGAGGTTGGAATAGTAGAGGCTTCAACAGCAAGGGAAGTGCAAGCATCAGGCTCATGCGAAGAGGTGCATGAACGGCATCGACAACATGTAACTCATCATCATCAACAACAACAACAGCAACAACAACAACAACATGTAACTCATCATCATCAACAACAACAGCAGCAGCAGCAACATCACCATCAGATTGCAAACTCGGCTTTTCATATCAGTAGGCCTTCACATCCCATCTCCACCATAATCTCTCCGCTTCCAGCTCCACTACACCACACGTCCATCATCCTCGACGAAAACTCCTACCATGTTAATAGAGTAATGCTCCAAAACGATAATTTTCAGCAGCAACAGCAGCAACAGCATCATAAGCTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAAGTTCAACTGATATCAAACCGGGGTCAACTATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1425 0.454 MNKMNNLSSVSSSDLIDAKLEEHQLGGSKQCPGCGHKFEGKRDWLGLPAGVKFDPTDQELIEHLEAKVEARNNMRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMMNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEREGELVVSKIFYQTQPRQCNWSDRSACTTGEGSGELPNGGRRDSGSGSCSSKEIVPTHRDEMTSVIVSGVNPMTGFTHALDIQQQLKSDHFSFIPFRKSFDHEVGIVEASTAREVQASGSCEEVHERHRQHVTHHHQQQQQQQQQQHVTHHHQQQQQQQQHHHQIANSAFHISRPSHPISTIISPLPAPLHHTSIILDENSYHVNRVMLQNDNFQQQQQQQHHKLGGRSASGLEELIMGCTSSSTDIKPGSTITNPQEAEWLKYSSYWPDPDNPDHHG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1921 474 ProSiteProfiles NAC domain profile. 47 209 IPR003441 GO:0003677|GO:0006355
Lja2g1921 474 Gene3D NAC domain 56 213 IPR036093 GO:0003677|GO:0006355
Lja2g1921 474 MobiDBLite consensus disorder prediction 332 361 - -
Lja2g1921 474 SUPERFAMILY NAC domain 42 209 IPR036093 GO:0003677|GO:0006355
Lja2g1921 474 MobiDBLite consensus disorder prediction 219 253 - -
Lja2g1921 474 Pfam No apical meristem (NAM) protein 48 190 IPR003441 GO:0003677|GO:0006355
Lja2g1921 474 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 2 448 - -
Lja2g1921 474 MobiDBLite consensus disorder prediction 314 361 - -
Lja2g1921 474 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 448 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1921 Lja-Chr2 20092394 20097884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1921 11 471 NAC Transcription Factor Family AT5G56620 50.620 1.32e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g1921 NAM 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1921 - - gmx:100795246 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1921 2 20092394 20097884 Lja2g1921 2 20092394 20097884 ECH