Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1914 ATGATCGGAGAACACCGTCGTGCTAATCCAACGGTCCACGTTCCTCCATGGACCATCCATGACGATCCAACGGCGGAGATTTACTCGCCGTACTTCGCCGCCGACGGCATTGCCGTCGACGGCGGCGAGTTTTCCCCGCAGTACATGCATGAGGCGCTGGCGGCGTTGCAGCGCTACCTGCCGTCGAACGAGGTGGACGCCGAGTCTGACTCGGATGCTCTCGGCCGTGACTCGGACGCTCCGGTGGACGCGTACTCGTGTGACCACTTCCGGATGTACGAGTTCAAGGTCCGGAGGTGCGCTCGTGGGAGGTCACATGACTGGACGGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCGCGCCGCCGTGACCCGAGGAAGTTTCATTACTCCGGCACGGCGTGTCCGGACTTTCGTAAGGGAAGTTGCAAGAAGGCTGACGCGTGTGAGTACGCGCACGGCGTTTTCGAGTGCTGGCTACACCCTGCGAGGTACAGGACTCAGCCATGCAAGGATGGGACTAGCTGCCGCCGGCGCGTGTGCTTCTTCGCTCACACGCCGGAGCAGCTTCGTCTTGTCCCGCAGCAGAGTCCTCGGAGCATGAACTCTGCTGATTCCTATGATGGGTCTCCGATGAGGAACGCTGCTGCTGCGATGCCGTTTATGTCGTCTCCGGTGTTGATTTCGTCGCCTCCGGTGAGTCCTCGCGGGGATTCGCCACCCATGTCGCCGATGGCGCAGTCGCTGAGCAGGTCTCTGGGTTCGAGCTCGATCAATGAGATGGTGGCTTCTCTGCGGCTGGGGAAGATGAAATCGATGCCACCTAACAGGAACATTCAAATGGGGTCTCCGGGTTTCGGGTCTCCGAGAGGGTCCATGCTCCGACTCCGACCCGGTTTCTGCAGCCTCCCTACTACACCGACCCAAGCACCGGTTCCGGGTCGCTCTGGTGTGAGCTATTTCGACCTTTGGGATCAGGATCTTGAGGAGGAGCCAGTTATGGAGAGGGTGGAATCTGGAAGTGTGATAAGGGCTAAGATGTTTGAGAAGCTAAGCAAAGAGAATTCTTTGGATAGGTCGGGTTCGGATTCGGGTCAAACTGGTGGAGCTCCGGATGTTGGGTGGGTTTCTGAGCTGGTGAAGTGA 1146 0.5934 MIGEHRRANPTVHVPPWTIHDDPTAEIYSPYFAADGIAVDGGEFSPQYMHEALAALQRYLPSNEVDAESDSDALGRDSDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGSCKKADACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSMNSADSYDGSPMRNAAAAMPFMSSPVLISSPPVSPRGDSPPMSPMAQSLSRSLGSSSINEMVASLRLGKMKSMPPNRNIQMGSPGFGSPRGSMLRLRPGFCSLPTTPTQAPVPGRSGVSYFDLWDQDLEEEPVMERVESGSVIRAKMFEKLSKENSLDRSGSDSGQTGGAPDVGWVSELVK* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1914 381 MobiDBLite consensus disorder prediction 353 381 - -
Lja2g1914 381 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Lja2g1914 381 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 381 - -
Lja2g1914 381 Gene3D - 86 155 - -
Lja2g1914 381 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Lja2g1914 381 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Lja2g1914 381 MobiDBLite consensus disorder prediction 232 253 - -
Lja2g1914 381 PANTHER UNKEMPT FAMILY MEMBER 7 381 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1914 Lja-Chr2 19974603 19976220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1914 85 245 C2H2 Transcription Factor Family AT5G12850 58.235 4.47e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja2g1914 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1914 - - aprc:113867365 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1914 2 19974603 19976220 Lja2g1914 2 19974603 19976220 ECH