Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1913 ATGGGAAGGGCTCCATGTTGTGACAAGTCTAGTGTGAAAAGAGGGCCATGGTCTCCTGAAGAAGATGCCACCCTCAAAAGTTACCTTGAGAAACATGGCACAGGTGGTAATTGGATAGCACTTCCACCAAAAGCAGGCCTGAACCGTTGTGGGAAGAGTTGTCGTCTAAGATGGCTGAACTATCTCAGGCCTCATATCAAGCTTGGAGGTTTCACTGAGGAGGAAGATGAAATTATCTACAACCTTTATAGCTCCATAGGAAGCAGGTGGTCTCTTATAGCTGCTCAATTCCCTGGGAGAACAGACAATGATGTGAAAAATCACTGGAACACCAAGCTAAAGAAAAAGTTTTTGGCAGCAAGCTCCAGTACTATTGTCACAGGCAACACTATCAGCAAGACTAGTTGTCCAGATCAGTTCTCTGCTTTTACTTTTCAGCCTCAGGTTGATCAAGCTTTTTTCCTTGATCAAAAAAGGAACTCAGCTTGTTTTGTCCCCAACAATGTTCTGGATTTGGAGCCAGCAGCAATTCCAGTTCCTTTAACAATGCCTCTGGAGACAGAAGCTTCTTCTTACACTGAGAGCAGCCTAGGTAGCAATTGTAACACACCACCCTTTAAGGAAGTTTCAGTTTTTTCAAGTGCACCTTCCTTGGCAGAGCAGAACAGTCATGTTCAGTGGTATGAAAATGGCCATGAAGGTGAAGATGATGGAGTTTTTCTTGAGTTTGTGCTTGAGGATCTACTGAATCATGGATTTGCTTCACTAGACAAAAGCAGCCAAGTTGCTCCATCATCTGGTAACCAAGATTGCAGCTACTCATCAAAATCTTGA 834 0.4365 MGRAPCCDKSSVKRGPWSPEEDATLKSYLEKHGTGGNWIALPPKAGLNRCGKSCRLRWLNYLRPHIKLGGFTEEEDEIIYNLYSSIGSRWSLIAAQFPGRTDNDVKNHWNTKLKKKFLAASSSTIVTGNTISKTSCPDQFSAFTFQPQVDQAFFLDQKRNSACFVPNNVLDLEPAAIPVPLTMPLETEASSYTESSLGSNCNTPPFKEVSVFSSAPSLAEQNSHVQWYENGHEGEDDGVFLEFVLEDLLNHGFASLDKSSQVAPSSGNQDCSYSSKS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1913 277 CDD SANT 71 113 IPR001005 -
Lja2g1913 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lja2g1913 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lja2g1913 277 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja2g1913 277 Gene3D - 7 68 - -
Lja2g1913 277 MobiDBLite consensus disorder prediction 258 277 - -
Lja2g1913 277 Gene3D - 70 135 - -
Lja2g1913 277 PANTHER OS09G0431300 PROTEIN 1 134 - -
Lja2g1913 277 SMART sant 67 115 IPR001005 -
Lja2g1913 277 SMART sant 13 64 IPR001005 -
Lja2g1913 277 CDD SANT 16 62 IPR001005 -
Lja2g1913 277 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja2g1913 277 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lja2g1913 277 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja2g1913 277 PANTHER OS09G0431300 PROTEIN 1 134 - -
Lja2g1913 277 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1913 Lja-Chr2 19951037 19952302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1913 1 122 MYB Transcription Factor Family AT2G36890 77.869 1.21e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1913 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1913 K09422 - gmx:778160 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1913 2 19951037 19952302 Lja2g1913 2 19951037 19952302 ECH