Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1910 ATGACCACTTCCTTCTCTGACCGCCGCCGCACTTCTCCCGCCGACCACAACCTCGGAGGCTCCAAAAGGCCTCATCAGCTGTTGTTGTCGGATCCAACAGGTTCTGGTGCGCCCAAATTCAAGTCCACACCTCCTCCACTTCCCATTTCTCCTTCTTACTTTTCACTCCCTCCTGGGTTGAGCTTTGCAGAGCTGCTTGATTCCCCTGTTCTCCTCAACTCCAATTCTCACATTTTGCCATCTCCAACAACTGGAACATTTGGCTTCAATTGGAAGATCAGTTCTGGGGAAAACCATCAGAATAATGTCAAGGAAGAAGATAAAAGCTTCTCAAATTTCTCCTTCCAAACCCAATCACAGCCTCCTATTCCTTCCACAGCAGGGTTTCAATCTTCAAACAGCATAGTTCAAAATGGATGGGCTAAACAAGATGAATTTTCTTCTGGAATGAGTATGGGGATGGTGAAAACTGAAGCCTCTTCTTCTATACAGAGTTATAATAACATTAACAACAATTACCATCCACAACAAGTTCAGACCCTGAGTAGAAGGTCAGATGATGGGTACAGCTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAGAATCCAAGAAGCTACTACAAATGCACATACCCCAAATGCCCAACAAAGAAAAAAGTTGAGAGGGCTTTAGATGGACAAGTTACTGAGATTGTTTACAAAGGCACTCATAACCATCCCAAGCCTCAGGCTCCTCATAAGAGGAACAGCTCATTCACTACCTCAAATCATGTCAGCACTGAAATACAAGGCGCCACTCATGGCAGTGGACAAATGGATTCTGTTGCAACCCCTGAAAACTCATCATTGTCAATGGGGGGTGATGATTTTGAACAGAGTTCTATGAGTAAATCAGGAGGAGAGGAGCTTGATGAAGATGAACCTCATGGCAAAAAATGGAGAATGGAGGGTGAAAATGAGGGCATGTCAGCAGCAGGAAGCAGAACGGTGAAAGAATCCAGAGTTGTGGTTCAAACAACCAGTGACATTGATATTCTTGATGATGGATACCGATGGAGGAAATATGGGCAGAAAGTAGTAAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACAAGCCGTGGATGCCCAGTGAGGAAGCACGTGGAGCGAGCCTCACAGGATCTAAAAGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGAAGTCCCTCCACCACGTGGCAGTGGTGGTGGTAGCTACTCTTCTATCAATAGACCAGTGCAAACCAATACCACAAACAACACAGCAACAAGCGTAGCCTCTGCTATGACTCTGAGTTCTCAACACAATAATAAAACTTCCTCCATCAACAATTCTCTTCAAGGACAAGCAGTGTTCACTTCTGAGATGCCTCAGAGCCAGAGCCAGGGAAACATTGGATTCCAAGGGTTTGGTGGGAATGCGATAGAATCTTATTATATGAACTTGAATCAGCAGCAATCTGAGGATATTTTTTCTTCCGGGGCCAAGGAGGAGCCTGTAGATGACTCGTTTTTTGAATCTTTGCTATGTTAA 1569 0.4481 MTTSFSDRRRTSPADHNLGGSKRPHQLLLSDPTGSGAPKFKSTPPPLPISPSYFSLPPGLSFAELLDSPVLLNSNSHILPSPTTGTFGFNWKISSGENHQNNVKEEDKSFSNFSFQTQSQPPIPSTAGFQSSNSIVQNGWAKQDEFSSGMSMGMVKTEASSSIQSYNNINNNYHPQQVQTLSRRSDDGYSWRKYGQKQVKGSENPRSYYKCTYPKCPTKKKVERALDGQVTEIVYKGTHNHPKPQAPHKRNSSFTTSNHVSTEIQGATHGSGQMDSVATPENSSLSMGGDDFEQSSMSKSGGEELDEDEPHGKKWRMEGENEGMSAAGSRTVKESRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSRGCPVRKHVERASQDLKAVITTYEGKHNHEVPPPRGSGGGSYSSINRPVQTNTTNNTATSVASAMTLSSQHNNKTSSINNSLQGQAVFTSEMPQSQSQGNIGFQGFGGNAIESYYMNLNQQQSEDIFSSGAKEEPVDDSFFESLLC* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1910 522 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 28 477 - -
Lja2g1910 522 MobiDBLite consensus disorder prediction 166 188 - -
Lja2g1910 522 Gene3D WRKY domain 172 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 ProSiteProfiles WRKY domain profile. 186 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 ProSiteProfiles WRKY domain profile. 343 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 MobiDBLite consensus disorder prediction 300 314 - -
Lja2g1910 522 MobiDBLite consensus disorder prediction 400 431 - -
Lja2g1910 522 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 477 IPR044810 GO:0003700
Lja2g1910 522 SUPERFAMILY WRKY DNA-binding domain 340 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 Gene3D WRKY domain 335 401 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 Pfam WRKY DNA -binding domain 349 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 Pfam WRKY DNA -binding domain 186 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 SMART WRKY_cls 185 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 SMART WRKY_cls 348 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 MobiDBLite consensus disorder prediction 415 431 - -
Lja2g1910 522 SUPERFAMILY WRKY DNA-binding domain 184 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1910 522 MobiDBLite consensus disorder prediction 166 185 - -
Lja2g1910 522 MobiDBLite consensus disorder prediction 1 44 - -
Lja2g1910 522 MobiDBLite consensus disorder prediction 238 314 - -
Lja2g1910 522 MobiDBLite consensus disorder prediction 247 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1910 Lja-Chr2 19888528 19892231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1910 65 453 WRKY Transcription Factor Family AT2G38470 46.618 8.10e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja2g1910 WRKY 2.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1910 K13424 - gmx:100127393 599.742