Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1906 ATGGAGCCTGAAGCTGACTATAAAGATAGCTCTCTTGTTCTGATTAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAGGTCTGTTATCAAGGAACGTTTCTCAAAGAAATACAGACATCCAATTTTGGATTCTAAGTTGACACTCAAGCGCTTAAATGCGGAGGCTAGATGCATGACCAAAGCAAGGCGCCTTGGGGTTCGTACTCCCGTGCTTTATGCTGTGGATCCTGTTTTGCACACATTAACATTTGAATATGTTGACGGCCCTTCAGTCAAAGATGTGTTTCTTGAATTTGGGTCTCTTGGTGTCAACGAAGAACGTATGGGCAACATTGCGTCCCAAATTGGTGATGCAATTGGAAAGTTGCATGATGGAGGTCTTGTTCATGGTGATTTAACTACATCAAACATGTTATTGAAGAATGATACCAATCAGTTGGTTCTTATTGACTTTGGTTTGAGCTTCACTTCAACTCTACCGGAAGATAAGGCTGTTGATTTGTATGTCCTGGAAAGAGCTATTCTTTCAATGCATTCTTCATGTGGCAATGTGGTAAGCCAACTTCTCATTTTCCCCTTAGTCCTAACTGTTATGCTGTAA 618 0.4142 MEPEADYKDSSLVLIKQGAEARVFESSFVGRRSVIKERFSKKYRHPILDSKLTLKRLNAEARCMTKARRLGVRTPVLYAVDPVLHTLTFEYVDGPSVKDVFLEFGSLGVNEERMGNIASQIGDAIGKLHDGGLVHGDLTTSNMLLKNDTNQLVLIDFGLSFTSTLPEDKAVDLYVLERAILSMHSSCGNVVSQLLIFPLVLTVML* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1906 205 ProSiteProfiles Protein kinase domain profile. 9 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1906 205 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Lja2g1906 205 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Lja2g1906 205 PANTHER O-SIALOGLYCOPROTEIN ENDOPEPTIDASE 1 195 IPR022495 GO:0004674
Lja2g1906 205 SUPERFAMILY Protein kinase-like (PK-like) 14 174 IPR011009 -
Lja2g1906 205 Pfam Protein kinase domain 56 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1906 205 Gene3D Transferase(Phosphotransferase) domain 1 108 196 - -
Lja2g1906 205 PANTHER EKC/KEOPS COMPLEX SUBUNIT BUD32-LIKE ISOFORM X1 1 195 - -
Lja2g1906 205 SMART serkin_6 9 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1906 205 TIGRFAM arch_bud32: Kae1-associated kinase Bud32 14 188 IPR022495 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1906 Lja-Chr2 19800802 19803706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1906 86 160 MAP Kinase Kinase Gene Family AT1G73500 34.667 6.71e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja2g1906 Pkinase 3.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1906 K08851 - jre:109018511 335.495