Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1898 ATGGAACACATTAAAAATCCATCAATTTACAAACAACCAGTCATACTGCAGAGCGAGGACTTAACTAAGTATATACTAGAGACTGCTGTTTACCCTCGAGAACCACAACCTCTCAAAGAGCTGAGGGATGCCACTGAGAGTCACCCTTGGGGTTTCATAGCTACTTTACCCGAAGCGGGTCCGCTAATCACCATTCTTCTGAAGCTGCTGAACCCCAAAAAGACAATTGAAGTGGGAGTGTTTACTGGATACTCTCTTCTCCTCACTGCACTCAACATTCCTGATGATGGAAAGATAACAGCCATAGACATTGACAGGAAAGCTTATGAGGTTGGATTACCAGTCATAAAAAAGGCTGGTGTGGAGCACAAGATTGATTTCATAGAATCTCCAGCTCTACCAATTTTGGATAAACTGCTAGAAGATGCTGCAAATGAAGGAACTTTTGATTTTGCCTACATTGACGCTGACAAAGAGAACTATGTGAACTACCATGAGAGGCTCATAAAACTGGTGAAGGTTGGTGGGTTGCTTATATATGATAACACACTCTGGGGTGGTTGTGTTGCTTGGCCTGATGAGAAAGTTCCACCACACAGTATGCCAATGAGGAATGCAGCAATTGAATTTAATAAAACAATCACAAAAGATTCTCGCGTCGAATTCGCTCTTACTTCTGTAGGCGATGGCCTCAGTATTTGCAGGCGTGTTGCCTGA 717 0.4296 MEHIKNPSIYKQPVILQSEDLTKYILETAVYPREPQPLKELRDATESHPWGFIATLPEAGPLITILLKLLNPKKTIEVGVFTGYSLLLTALNIPDDGKITAIDIDRKAYEVGLPVIKKAGVEHKIDFIESPALPILDKLLEDAANEGTFDFAYIDADKENYVNYHERLIKLVKVGGLLIYDNTLWGGCVAWPDEKVPPHSMPMRNAAIEFNKTITKDSRVEFALTSVGDGLSICRRVA* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1898 238 CDD AdoMet_MTases 76 180 - -
Lja2g1898 238 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 14 237 IPR002935 GO:0008171
Lja2g1898 238 Gene3D Vaccinia Virus protein VP39 6 238 IPR029063 -
Lja2g1898 238 PANTHER O-METHYLTRANSFERASE-RELATED 4 237 - -
Lja2g1898 238 PANTHER METHYLTRANSFERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 4 237 - -
Lja2g1898 238 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 18 236 IPR029063 -
Lja2g1898 238 Pfam O-methyltransferase 28 237 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1898 Lja-Chr2 19619828 19621226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1898 15 237 Monolignol Biosynthesis Gene Families AT4G26220 61.883 6.91e-105 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1898 K00588 - gmx:100800911 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1898 2 19619828 19621226 Lja2g1898 2 19619828 19621226 ECH