Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1893 ATGGGTCGGCGAAGGAACCAGAACAACAACGAGGAGGAGGCTAACGTCAACAGCATCGAGGAAGCCAACGTCAACATGAACCACCTTCGATTCCAGGATGCTGATGACGAGGTTATTGAGGATGTCGCTGAAACCTCAAATCTCGACCAATCCATGTGCGACGACCCTGACGATTCCGATGACAAAACCAGCGCCGATTACTACTTCGATTCCTACTCTCACTTCGGAATTCATGAAGAAATGTTGAAGGACACTGTAAGAACAAAGACATACCAAAGTGTTATTTATCAGAATAAGTTTTTATTCAAGGATAAAATAGTTCTTGATGTGGGTGCTGGCACTGGGATTTTATCTCTATTTTGTGCTAAAGCTGGGGCTAAACATGTCTATGCTGTTGAGTGCTCCCAGATGGCTAACATGGCAAAGGAAATAGTTGAAACTAATGGTTACTCTAATGTTATAACAGTTTTGAAGGGAAAGATTGAAGAACTTGAACTTCCAGTTCCTAAAGTAGATATAATCATTTCAGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTAAATTCTGTACTTTTTGCACGTGACAAATGGCTTGCGGATGATGGAATTGTGCTACCTGATAAAGCATCCCTCCATCTTACTGCCATAGAAGATGCAGAGTATAAAGATGATAAAATTGAGTTTTGGAACAATGTATATGGATTTAACATGAGCTGCATTAAGAAACAAGCCATAATGGAGCCTCTTGTTGACACGGTTGACCAGAATCAGATTGCTACGAACTGTCAGCTACTCAAGACAATGGACATCTCAAAGATGGCTCCTGGTGATGCTTCATTCTCCGTGCCTTTTAAGCTTGTAGCTGCTCGTGACGATTTTATTCATGCCCTTGTTGCATATTTTGATGTAACATTTACAATGTGTCATAAGTTAATGGGCTTCTCTACAGGGCCAAGATCGCGAGGTACACATTGGAAGCAAACAGTCCTATATCTGGAAGATATCTTGACCGTATGTGAGGGGGAGGCAATTGTAGGGAGTCTAACTGTGGCTCCAAATAAGAAAAATCCTCGGGATGTTGATATAATGCTCAAGTATTCATTCAATGGCAAGCGATGCAATGTTTCAAAGGTTCAGCATTACAAGATGCGTTGA 1161 0.41 MGRRRNQNNNEEEANVNSIEEANVNMNHLRFQDADDEVIEDVAETSNLDQSMCDDPDDSDDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQSVIYQNKFLFKDKIVLDVGAGTGILSLFCAKAGAKHVYAVECSQMANMAKEIVETNGYSNVITVLKGKIEELELPVPKVDIIISEWMGYFLLFENMLNSVLFARDKWLADDGIVLPDKASLHLTAIEDAEYKDDKIEFWNNVYGFNMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDASFSVPFKLVAARDDFIHALVAYFDVTFTMCHKLMGFSTGPRSRGTHWKQTVLYLEDILTVCEGEAIVGSLTVAPNKKNPRDVDIMLKYSFNGKRCNVSKVQHYKMR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1893 386 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 385 IPR029063 -
Lja2g1893 386 Pfam Ribosomal protein L11 methyltransferase (PrmA) 99 177 - -
Lja2g1893 386 Gene3D - 210 386 - -
Lja2g1893 386 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1.2-RELATED 32 386 - -
Lja2g1893 386 Gene3D Vaccinia Virus protein VP39 56 208 IPR029063 -
Lja2g1893 386 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 65 366 IPR025799 GO:0016274|GO:0018216
Lja2g1893 386 CDD AdoMet_MTases 107 207 - -
Lja2g1893 386 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 32 386 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1893 Lja-Chr2 19564423 19567640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1893 9 348 C2H2 Transcription Factor Family AT3G12270 35.342 2.94e-64 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1893 2 19564423 19567640 Lja2g1893 2 19564423 19567640 ECH