Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1887 ATGGTGGCTGCGGCCGTCAACAACAGGTTGAAGAGGGAGCAATGCGACCGCACCAAACACGATTCCAACTTTTCCCATTGGAAGATTCTTATTGGCCCTTCTGATTGGGAGGACTTTTCCAAGGGAAAGGAAGGATCTGCAAGGTACAGGATTCATAACCTTCATAAAAATTCAGGATCAGGAGTTTATGAGCTTGGGATAGCTGTGTCGAGGAGCGGTTTGGGGCGTGAAATTTATAAGCTTGTGGCCGCTGACCCTCAACGCGTTGTTGTGGTTTACCTTGGAGAAGCGGACAATGTGAGAGCGCGGCTCCAGTGTTATGGCAGAAGTGGGGCTCATCTGGGCAATAGCGGCTCGGATGATGCGTCTCCGCAGAAGGGGCGGCCATTGTTTCAGGAGATATTTTCTCAAGGCTTCCCAATTGTTTATAGATGGGCTCCTATGCAAAACAAGGAAGATGCTCTGCGAACAGAAGCTCAGCTGCTCGATACATTTGATTATGCATGGAATACTAGCAATAATGGTACTCGGCGGCCTGATGATATTCTTCGAATGCTAAACAAAATTGCTTCGAGCACCAGAACATTTTCAGATGTAGCCAAAGTGCTTCTACCTTTCACTCAGAGGCAAGTGGGTATCCAAATTGAATCAAGCAAGCTACCTCTTGCAAATGACAAATCAGATGATGAAGCAGACAGTGGCAGCAATAATTTCCTATCTCGTGTATTCAAATTTAACAGATCACGTCCTAGGATAGTTCAGGATATCACTAGTGGCGTCATTCAGGAGAATGCTAAAATTTGTGGAGTGACGTTGGGTGATGGTTCTATTTGTAGAAAGCCGCCAGCTGAGAAAAGACTGAGGTGTCCTGAACACAAAGGAATGAGAACAAATGTGTCCACTGCCAAAGCCATCAAAGCACCTGAATCAAAGAGCGTTAGCTACAGATACCAAAATGCCAGCCATGATATAAAAGACCCTCCACAAACCTTGGTCGAGCGTCCTGTTGATGAGATTATCACCCAGACTAATATATGTGGAATCGTCTTGGATAATGGCTTCCCTTGTAGAAGAGAACCAGTTAAAGGAAGAAAAAGGTGCCAAGAACACAAAGGAATGAGAAGAAATGTGTCCACTGCCAAAGTGATCAAAGCACCCAAGTCAGAGGACATTGTGCTACCCTATGAATTTCCTCAAACAGAGGGCAATGGCTACAGATACCAAAATGTCAGTCATGATGTAAAAGACCCTCCACAAGCATTGGTTGGGAGTCCTGTTGGTGAGATTATCAACAACACCAATATATGTGGAATCATCTTGGATGATGGCTCCACTTGTAGAAGACAACCAGTTAAGGGAAGAAAAAGGTGCCTTGAGCACAAAGGGAGGAGAATTCGTGCATCATTTCATGTAAACCAGAGGTAA 1425 0.4498 MVAAAVNNRLKREQCDRTKHDSNFSHWKILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSGVYELGIAVSRSGLGREIYKLVAADPQRVVVVYLGEADNVRARLQCYGRSGAHLGNSGSDDASPQKGRPLFQEIFSQGFPIVYRWAPMQNKEDALRTEAQLLDTFDYAWNTSNNGTRRPDDILRMLNKIASSTRTFSDVAKVLLPFTQRQVGIQIESSKLPLANDKSDDEADSGSNNFLSRVFKFNRSRPRIVQDITSGVIQENAKICGVTLGDGSICRKPPAEKRLRCPEHKGMRTNVSTAKAIKAPESKSVSYRYQNASHDIKDPPQTLVERPVDEIITQTNICGIVLDNGFPCRREPVKGRKRCQEHKGMRRNVSTAKVIKAPKSEDIVLPYEFPQTEGNGYRYQNVSHDVKDPPQALVGSPVGEIINNTNICGIILDDGSTCRRQPVKGRKRCLEHKGRRIRASFHVNQR* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1887 474 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 329 389 - -
Lja2g1887 474 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 3 321 - -
Lja2g1887 474 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 329 389 IPR038909 GO:0003677|GO:0006355
Lja2g1887 474 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 3 321 IPR038909 GO:0003677|GO:0006355
Lja2g1887 474 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 415 468 IPR038909 GO:0003677|GO:0006355
Lja2g1887 474 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 415 468 - -
Lja2g1887 474 SMART uri_9 78 175 IPR000305 -
Lja2g1887 474 Pfam GIY-YIG domain-containing protein 24 183 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1887 328 473 HRT Transcription Factor Family AT5G56780 36.242 2.94e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Lja2g1887 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1887 - - lang:109350609 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1887 2 19537369 19540910 Lja2g1887 2 19537369 19540910 ECH