Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1886 ATGAGCAAAGAAAAGCAGGGTTGTTATGGAAAGAAGGGTTCCTGTGATGTGAGTGGTGGCAAAGTGGTGGTGGTTGCAGTTAAGGCTTCGGCAGAAACTTCAAGGAAATGTTTGGTATGGGCTTTGACTCATGTTGCTCAACCAGGGGATTGCATTAAGCTGTTGCTCGTTATTCCGGCTATCACCACCTCAAACAATAGGGTTTCAGGATTCTCAAGACTTGCTACTACGTGTATTACTAATCAGTGGAGATCCTCTTTTGGAAGTGCTTCAGATCAGAAAGAAGTTAGTGTAAAATCCTGTTCTCAAATGGTGCTCCAACTTCATGACTTGTATGATCCAGAGAAGATAAAGATCAGAATAAAGGTTCTTTCTGGTTCTTCATGTGGAGTAGTGGCTGCTGAAGCCAAGAAAGTCCAATCAAGCTGGGTTATATTGGACAGAAAGTTGAAAAATGAAAAGAAACACTGCATGGAGGAGCTGAGTTGCAACACTGTAATCATGGGGCTATTTGGGCCAAAGGTTTTAAGATTGAATTTGAATTTTAACAGTTCACCAAATGTGGAAATTATAGGGAAGCTGAAAGCATTTCCAAGAAACTTCAAAGAAAAGTCTGACTTGACTGCAACTAACATTGAAACATTATCACCATTAAGCTCAGACCCTGGGAATTCACCTTTTTCTCACTGTGGTGAAAATGTCAGACAAAGGAGAGATCTGGAGGAAAGTGAATCTGATTCAGAGATGGAAATATTGAATTTATCATCCAAAAGTTCATCTTTCCAGCCATGGATTTCAAATGCAATATGCATCCATTCCACTGATGAGGCATTGGTTTCTACCAGCCAAACATTGCTTCAAGACTTCCCAAAATTAGATCAAGATCCTATTTTAGGAAAGCTTAATTGCAAGCTTGATGTGAACTTAAGCAGAAGTGTTAGAGAAGCCATTTCTCTATCCAGAAATGCCCCTCCTGACACTCCCCCATTGTGCTCTATTTGTCAGCATAAGGCACCTGTATTTGGGAATCCTCCAAAATGGTTTACATTTGCCGAATTGCAACTTGCCACTGATGGATTTTCACAAGCAAATTTTCTGGCTGAAGGTGAATTTGGTTCTGTCCACCGTGGTGTCCTACCTGATGGCCAGGTCATTGCTGTCAAGCAGTGTAAATTAGCTAGTACTGAAGGTGATGGAGAATTTTGCTCAGAAGTAGAGGTCTTAAGCTGTGCACAACATCGTAATGTTGTGACGTTAATTGGGTTTTGTGTGGAGGATGGAAGAAGACTGCTAGTTTATGAATACATCTGCAATGGATCTCTATATTCTCATCTTCATGGAGAAAAGCAGAATGTGCTGAAATGGTCTGCACGTCAAAGAATAGCAGTGGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTCCACCGTGACATGAGGCCTAACAATATTCTGCTCACTCATGACTTTGAAGCATTGGTGGGAGATTTTGGAGTTGCAAGGTGGCAGCCAGATGGTGAAATGGGTGTGGAAACCAGGGTGATAGGGACATTTGGGTATTTGGCTCCAGAATATACCCAAAGTGGTCAAATCACTGAAAAAGCAGATGTGTACTCCTTTGGAGTAGTACTACTGGAGCTTGTTACAGGACAGAAAGCTGTGGATATGAACAAGCCCAAAGGGCAGCAATGTCTTCATGAATGGGCACGCCCATTGCTTGAGGGAAATGCCATTGATAAAGTGGTTGATCCAAGAATAACAAACTGCAGTGTTGATCAAGAGGTTCATCGCATGCTGAAATGTGCCTCATTGTGCATCCAGCAAGATCCTCATTTAAGACCACGAATGTCACAGGTGCTCCGGATGCTTGAAGGTGATATTTTGACGTGA 1911 0.4218 MSKEKQGCYGKKGSCDVSGGKVVVVAVKASAETSRKCLVWALTHVAQPGDCIKLLLVIPAITTSNNRVSGFSRLATTCITNQWRSSFGSASDQKEVSVKSCSQMVLQLHDLYDPEKIKIRIKVLSGSSCGVVAAEAKKVQSSWVILDRKLKNEKKHCMEELSCNTVIMGLFGPKVLRLNLNFNSSPNVEIIGKLKAFPRNFKEKSDLTATNIETLSPLSSDPGNSPFSHCGENVRQRRDLEESESDSEMEILNLSSKSSSFQPWISNAICIHSTDEALVSTSQTLLQDFPKLDQDPILGKLNCKLDVNLSRSVREAISLSRNAPPDTPPLCSICQHKAPVFGNPPKWFTFAELQLATDGFSQANFLAEGEFGSVHRGVLPDGQVIAVKQCKLASTEGDGEFCSEVEVLSCAQHRNVVTLIGFCVEDGRRLLVYEYICNGSLYSHLHGEKQNVLKWSARQRIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGVARWQPDGEMGVETRVIGTFGYLAPEYTQSGQITEKADVYSFGVVLLELVTGQKAVDMNKPKGQQCLHEWARPLLEGNAIDKVVDPRITNCSVDQEVHRMLKCASLCIQQDPHLRPRMSQVLRMLEGDILT* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1886 636 MobiDBLite consensus disorder prediction 215 246 - -
Lja2g1886 636 MobiDBLite consensus disorder prediction 215 231 - -
Lja2g1886 636 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 239 635 - -
Lja2g1886 636 Gene3D Phosphorylase Kinase; domain 1 332 435 - -
Lja2g1886 636 Gene3D Transferase(Phosphotransferase) domain 1 436 634 - -
Lja2g1886 636 ProSitePatterns Tyrosine protein kinases specific active-site signature. 481 493 IPR008266 GO:0004672|GO:0006468
Lja2g1886 636 ProSiteProfiles Protein kinase domain profile. 360 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1886 636 PANTHER OS01G0253100 PROTEIN 239 635 IPR045271 GO:0004714|GO:0006468
Lja2g1886 636 PANTHER OS01G0253100 PROTEIN 18 196 IPR045271 GO:0004714|GO:0006468
Lja2g1886 636 CDD STKc_IRAK 366 632 - -
Lja2g1886 636 Pfam Protein kinase domain 364 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1886 636 SUPERFAMILY Protein kinase-like (PK-like) 340 631 IPR011009 -
Lja2g1886 636 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 18 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1886 Lja-Chr2 19530086 19535229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1886 310 626 Trihelix Transcription Factor Family AT1G68690 48.598 1.16e-99 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lja2g1886 Pkinase 8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1886 - - lja:Lj2g3v0911680.2 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1886 2 19530086 19535229 Lja2g1886 2 19530086 19535229 ECH