Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1879 ATGGGGAGGAAGTGCTCACATTGTGGAATCATAGGCCATAATTCCAGGACCTGCACCTCTTTGATCAGAGGTAGTTTTGTCGGGGTTCGCCTCTTCGGCGTTCAACTGGACATATCCTCCTGTCTCACCATGAAGAAAAGCTTCAGCATGGACTCCTTGCCCTTACCCTCTTCATCATCTTCTCCATCTTCCTCCTTTTGTTCGTCAAGAATAACGGTTGAAGAGAATTATGACAGAACCTCATTCGGGTATCTATCAGATGGTCTCATTGCTGGAGCACAAGAGAGGAAGAAAGGAGTTCCGTGGACAGAAGAAGAACACAGAACATTCCTAATTGGATTAGAGAAACTGGGAAAAGGAGACTGGAGGGGAATCTCTAGAAACTATGTGACTACAAGAACACCAACCCAAGTTGCAAGCCATGCTCAGAAGTACTTCATTCGACTAGCCATGATGAATAAGAAGAAAAGACGTTCAAGTCTCTTTGACATGATTGGTAGCAAAAGCACAAAAACTACTCCTCATCCAAATAGCAGTTCAGATTCTTGTAATCAACAAGTTAAATCCAAATGTGAAGTTGAGAAGGATGCTACTTTGTCACTGCTAACCTCCTTCCAACAAGAAACTAAATCAGATGATGATGATGAGAAGAAAACTGGTGATGATAGATACTCTAACGTTGAAGCATCAGAAGCTGCAGAGCCTATGTGGCTATCCTCAAATGCAGTAGGGCCTGATCTGCAGCTCACTCTTGCAGCACCTAAAGTAAACACCTTGGAACAACCTAAGTCATCCCCTGGTTCCTTCCTTCTTGGGTCAATTAGTGTCACTTGA 834 0.4353 MGRKCSHCGIIGHNSRTCTSLIRGSFVGVRLFGVQLDISSCLTMKKSFSMDSLPLPSSSSSPSSSFCSSRITVEENYDRTSFGYLSDGLIAGAQERKKGVPWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLAMMNKKKRRSSLFDMIGSKSTKTTPHPNSSSDSCNQQVKSKCEVEKDATLSLLTSFQQETKSDDDDEKKTGDDRYSNVEASEAAEPMWLSSNAVGPDLQLTLAAPKVNTLEQPKSSPGSFLLGSISVT* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1879 277 PANTHER TRANSCRIPTION FACTOR KUA1 1 275 - -
Lja2g1879 277 MobiDBLite consensus disorder prediction 204 239 - -
Lja2g1879 277 SUPERFAMILY Homeodomain-like 95 149 IPR009057 -
Lja2g1879 277 SMART sant 98 148 IPR001005 -
Lja2g1879 277 MobiDBLite consensus disorder prediction 208 228 - -
Lja2g1879 277 MobiDBLite consensus disorder prediction 166 186 - -
Lja2g1879 277 MobiDBLite consensus disorder prediction 257 277 - -
Lja2g1879 277 Gene3D - 100 152 - -
Lja2g1879 277 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Lja2g1879 277 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 275 - -
Lja2g1879 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Lja2g1879 277 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
Lja2g1879 277 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
Lja2g1879 277 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Lja2g1879 277 CDD SANT 101 146 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1879 Lja-Chr2 19464808 19466428 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja2g1879 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1879 - - gmx:778093 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1879 2 19464808 19466428 Lja2g1879 2 19464808 19466428 ECH