Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1858 ATGAAGCCTCAGCCTCACGGTGACGGTGGCTCCACCGCACACAACCCCTGTGAAGGTTCAGGAGCAGAGAAGAAGAGCCTCATCAACCCTGAGCTCTGGCAAGCTTGTGCAGGGCCACTTGTGAATCTTCCCCCTGCTGGAACCCATGTTATCTACTTCCCTCAAGGACACAGTGAACAGGTTGCTGCATCTTTGAAGAAAGATGTGGATGCCCAGATTCCCAATTACCCTAATCTACCTTCCAAGTTACTTTGTCTTCTCCACAATGTCACTTTGCATGCTGATCCAGAAACAGATGAAGTATATGCTCAGATGACACTTCAACCTGTGCCTTCTTTTGACAAGGATGCTTTATTAAGATCTGATCTTGCTCTAAAGTCAAGTAAGCCACAGCCTGAGTTTTTCTGTAAGCAACTCACGGCAAGCGATACGAGTACTCATGGAGGTTTTTCTGTGCCTCGCCGTGCTGCGGAGAAGATTTTCCCTCCTCTTGATTTTTCTATGCAACCTCCTGCTCAAGAACTTACGGCTAGGGATCTGCATGATACTCCTTGGACATTCCGCCATATCTACCGTGGGCAACCAAAACGCCACTTGCTTACTACTGGATGGAGTCTATTTGTTAGTGGAAAGAGGCTTTTCGCTGGGGACTCTGTTTTATTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCATCCTCTGTACTATCAAGTGATAGCATGCACATTGGAATTCTTGCTGCTGCAGCTCATGCTGCTGCAAACAATAGTCCCTTCACTATCTTTTATAACCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTGTACAGCCACCAAATATCCCCTGGCATGCGCTTCCGAATGATGTTTGAAACTGAAGATTCGGGAACAAGAAGGTATATGGGTACTATTACTGGTGTCAATGACCTGGATCCTGTGAGATGGAAGAACTCTCAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAAAAGCGTAGCAGGGTCTCAATATGGGAAATTGAACCTGTGACTGCTCCTTTTTTCATCTGTCCTCCCCCGTTCTTTAGATCCAAGAGGCCAAGACAACCAGGACTGCATGATGATGAGTCATCTGATTTTGATAACCTTTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGTCCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGTTCAATGGATGAACTTGCAGCAGAATCCTGCATCAGCTAACTCATTGCAGCCAAATTATGTTCCTTCCTTCTCAGGATCTGTTTTGCAAAATCTTCCTGGGGCAGATTTTCATCGTCAGCTGGGATTTTCTAGTCCACAACTTTCTCAGCCACATAATGTACCCTTCAACGCTCAGAGGCTCCTTCAGACTGCACAACAGCTTGATCACCTTCAGAAGCTACCGTCCACTTCTAGCACATCGGGGACCATCCTGCAGCAACAGTCTGGTGATATCACTCAGCAAACAAGGCCGAACATGGCAAATCAAACTCTTCCTCACAGTCAAGCTCAGGCCCAACTCCTGTATCCCCAGAATCTTGTTCAAACCAACAATATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAACTCCATAGAAACCTCTCTCAGAACCCACCACAGCAGCTACAGCAGCAGCAGCAACAGCAGCAGCAGCATCAGCAACAGCAACAGCAACAGCAACATCAGCAACACCAGCAGCATCAGCAGCAGCAGCAGCAGATAGTTACAGGTCTAAACCAACAACAAAGTTTGACCCAATCCCCTATACCTGAACACCATCAACAGTTTCAGGTGTCTGATAATCAAATTCAGTTTCAATTGTTACAGAAGCTTCAACAACAACAAAAACAAATGCTCTTGGCACAGCAATCTGCGCTGCAGCAACCTACTCAATTTACTCAGTTCCAGGATCAGCAGAGGCATCTTTTAGATAAAACACAAAACTTATCTAAAACACCAATACCTGGTCAAGTGCTGGAAAATCCTTCTATACTTCAAAATTCACTCTCTGAGGCCAATTCTATCACACTTCAGATGGCAAAGGCTAATGGCCGCAATGATATTCAATATTCTCATCTCTCTCAGCAGCCCAAGCTTCAACATCAGCATTCTGGCTTGCTGTCTGAAATGTCTGGCCACATGGCACTTCCCCCTACCCCTACAACCAATCAGCATTCTGCTGCTGGCAGTAGTAGACTTACTGGAGCAGCTGGTGCTGCGCAATCTGTAATTACTGATGATGTTCCATCTTGTTCCACCTCACCTTCTACAAATAACTGTACCAATGCTCTTCCGCAATTGATAAATTCTCACTTACATAGAAGCACAATGTTAGGAGATGACATGGCTCAGTCTGCTGCCACAATCTTGAGTTCAAGTGCCTTAGAAACTGTGTCATCAAACGCAAATTTGTTGAAAGATTTGCACCCCCACTCTGAAGTTAAGGCTTCTCTCAACATTTCAAAAAATCAGAATCAAGGAAATTTTGTTTCTCAGACATACTTGAATAGTGGAGCTGCCCCGACAGATTGTTTGGATACATCATCTTCTACATCAGTTTGTCTGTCTCAGAATGATGTTCACATGCATCAGATTAACAACCCATTATCTTACAATCCACAGTCTATGTTCTTTAGAGACAATAGTCGAGATGGGGAAGTTCAGGCAGATGGTAGGAGCAATATTCCATATGTCAATAACATTGATAGCCAAATGAGAATGCCACCGAATACAGATTCTGATTTAACCAAAGGCACATTGGGGCTGGCGAAGGATTTGTCTAGTAATTTCTCTTCAGGAGGCATGCTTGGTAACTATGAAAATAATAAAGATGCTCAGCAGGAACTTTCATCTTCAATGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATTCCACAATCGATGACAGTAGCTTCTTGAATGGTGATCCATGGGGTCCACAACCAGCACCGCCACCACCACCAGCACAGTTTCAGCGGATGAGGACATATACCAAGGTATATAAACGGGGAGCTGTGGGAAGGTCCATCGATATAGCACGGTATTCAGGATATGAGGAGCTTAAACAGGATCTAGCTCGTAGGTTTGGCATTGAGGGACAATTGGAGGATCGACAAAGGATAGGTTGGAAACTTGTCTATGTAGATCATGAGGGTGATGTTCTACTAGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGTGTCCGCTGTATTAAAATACTTTCTCCCCAAGAAGTGCAACAAATGAGTTTGGATGGAGATTTTGGCAGTGGTGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGATGGTGGGAATACTTAA 3441 0.4478 MKPQPHGDGGSTAHNPCEGSGAEKKSLINPELWQACAGPLVNLPPAGTHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELTARDLHDTPWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGVNDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGLHDDESSDFDNLFKRTMPWLGDDMSMKDPQGLPGLSLVQWMNLQQNPASANSLQPNYVPSFSGSVLQNLPGADFHRQLGFSSPQLSQPHNVPFNAQRLLQTAQQLDHLQKLPSTSSTSGTILQQQSGDITQQTRPNMANQTLPHSQAQAQLLYPQNLVQTNNILQQQQPSIQNHQLHRNLSQNPPQQLQQQQQQQQQHQQQQQQQQHQQHQQHQQQQQQIVTGLNQQQSLTQSPIPEHHQQFQVSDNQIQFQLLQKLQQQQKQMLLAQQSALQQPTQFTQFQDQQRHLLDKTQNLSKTPIPGQVLENPSILQNSLSEANSITLQMAKANGRNDIQYSHLSQQPKLQHQHSGLLSEMSGHMALPPTPTTNQHSAAGSSRLTGAAGAAQSVITDDVPSCSTSPSTNNCTNALPQLINSHLHRSTMLGDDMAQSAATILSSSALETVSSNANLLKDLHPHSEVKASLNISKNQNQGNFVSQTYLNSGAAPTDCLDTSSSTSVCLSQNDVHMHQINNPLSYNPQSMFFRDNSRDGEVQADGRSNIPYVNNIDSQMRMPPNTDSDLTKGTLGLAKDLSSNFSSGGMLGNYENNKDAQQELSSSMVSQTFGVPDMTFNSIDSTIDDSSFLNGDPWGPQPAPPPPPAQFQRMRTYTKVYKRGAVGRSIDIARYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHEGDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGSGGLPNQACSSSDGGNT* 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1858 1146 SMART B3_2 135 237 IPR003340 GO:0003677
Lja2g1858 1146 Coils Coil 576 596 - -
Lja2g1858 1146 CDD B3_DNA 134 226 IPR003340 GO:0003677
Lja2g1858 1146 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Lja2g1858 1146 SUPERFAMILY DNA-binding pseudobarrel domain 124 264 IPR015300 -
Lja2g1858 1146 Gene3D - 1029 1123 - -
Lja2g1858 1146 MobiDBLite consensus disorder prediction 1125 1146 - -
Lja2g1858 1146 SUPERFAMILY CAD & PB1 domains 1051 1112 - -
Lja2g1858 1146 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g1858 1146 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 594 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja2g1858 1146 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 584 1141 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja2g1858 1146 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Lja2g1858 1146 Gene3D - 299 370 - -
Lja2g1858 1146 Pfam AUX/IAA family 1033 1119 IPR033389 -
Lja2g1858 1146 PANTHER AUXIN RESPONSE FACTOR 9 594 - -
Lja2g1858 1146 PANTHER AUXIN RESPONSE FACTOR 584 1141 - -
Lja2g1858 1146 MobiDBLite consensus disorder prediction 570 608 - -
Lja2g1858 1146 Gene3D - 133 236 IPR015300 -
Lja2g1858 1146 ProSiteProfiles PB1 domain profile. 1034 1118 IPR000270 GO:0005515
Lja2g1858 1146 Pfam Auxin response factor 261 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1858 Lja-Chr2 19190977 19198170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1858 24 474 B3 DNA Binding Superfamily AT1G19220 73.348 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja2g1858 AUX_IAA 5.6e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1858 - - ccaj:109803454 1763.04