Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1857 ATGTCAAGGTCTCCAATGGTAGAAAAGAAGCTAGCTGCCGGGCGCGTTGTGGCGGTGGCAATTGAGAACAACAAGACAAGCCAGCTTGCTGTAAAGTGGGCAGTGGATAATCTCGTTCCCAAAGATGAACGCCTCCATCTAGTTCATGTCATACAAAGAGAATCAACACGAAATGATATGAGCGAAGATGTGGCCGCCATCAATGAATGCAAGGAGCTTTTTGATACATTTCGCGTCTTTTGCAACCGGAAAAATATAGAATGCAAAGAAATCTTGTTGGAAGACATGGATATATCCAAGGCATTGATAGATGGCATTTCCGCGCATTCCATCGAGCTTTTAGTGCTCGGAGCAGCATCGAGGAGTGGCCTTGTCAGAAGATTTAGGACAGCAGATGTACCAAGCACGGTGTCAAAAGGCGCACCACAGTTCTGCACTGTATATACCATTGCTAAGGGAAAGATCTCAACTGTGAGAAATGCAACAGGTTCACTAGCTGCTAAAACACCTGCACCTGCACCTGCATCGGCACCACCACCGACACGTAACCAATTGCAGCCTCATTCACACCCTGGAAGAAGTCCTGAGAGAATTGATCAACTATCATCTGCGCGGAACTACCCGCCACGACCTTCTGGTGATAAACCTCCATTTGGGAGTGGGAACCGTATTCACGCGCTGGATGATGATGACATGATGATATCACCGTTCTCAAGAGCTGGGCACAGATATGAGTCCTCAGGTCATGATTGTGATATATCATTCGTGTGCAATGGAAGGCCGAATGCTGATCGAATGTTCCATTCAATGTATGATGATCTGGACTCTGGAACCGGAGCTCGGCTTTCATATGGCTCAGATTATGATGCTAGAAGCTACGGTTCTTCCTACTCAGGACCTAAGTCAATTGACATGAACTCTCCTCACGATCAGGACAATTTTTCATTCACCAGCTCGCAAAGCAGCGGAATAGGATCGCTAAGGTTATCCGACCAAACGGATGATGTGGAAGCCGAGATGAGAAGACTGAAGCTAGAACTTAAGCAGACAATGGAAATGTACAGTTCAGCTTGCAAGGAAGCTCTCACAGCAAAGGAGAAGGCATTGGAACTTCAACGGTCGAAAATGGAAGAACAAAAGAAGCTGGAGGAGGCCCGGATAGCTGAAGAAGCAGCGATGTCACTTGTGGAAAAGGAGAAAGAAAAGTCTAGAGTTGCATTGATGGCAGTAGAAGCATCTCAGAAGATTGCGGCGTTGGAAGCACACAAAAGAATGAGTGCAGAATCAGAAGGTCAGAAGAAGAAGTCAGATGATAGTTTTTCGCATACTGCTAGGTACAGAAGATACACTATTGAGGAAATTGAAGAGGCAACAAAAGACTTTTCTGCCTCTCTCAAGATAGGCGAAGGAGGCTATGGTCCTGTTGCAATAAAAGTTTTGAAGCCAGATGCAGCTCAAGGAAGAGCACAATTTCAACAAGAGGTTGAAGTGTTGAGTTGCATAAGGCATCCAAACATGGTTCTCCTCCTTGGAGCATGTCCAGAATATGGTTGCTTAGTGTATGAGTACATGGCTAATGGAAGCTTGGATGATTGCCTCTTCCGGAAAGGTAAGGCGCCACCTCTCCCGTGGCAGCTAAGATTCCAAATTGCTGCAGAGATAGCCACAGGACTTCTTTTCCTTCACCAGACAAAGCCGGAGCCGCTAGTGCACCGTGACTTGAAACCAGGAAACATTTTGCTCGACCGCAACTACGTGAGCAAGATCGGTGACGTGGGGCTGGCCAGGCTTGTCCCTCCAACGGTTGCAGACACCGTGACTCAGTACCGCATGACATCGACCGCTGGAACTTTCTGTTACATTGATCCTGAGTACCAGCAAACGGGCATGCTCGGAATCAAGTCTGATATTTACTCACTGGGGATCATGCTTCTACAAATGGTAACAGCCAAGCCACCAATGGGTTTAACTCATCATGTTGGGAGATCCATTGAGAGAGGGACTTTTCCTGAGATGCTTGACCCTGCCGTTGGGGACTGGCCACTTGAAGCTACCTTGCATTTTGCCAAACTTGCCCTGCAATGTGCTGAAATGAGGAGAAAAGATAGACCTGATCTTGGAAAAGTTGTATTACCTGAGCTCAACAAACTTAGAGCATTTGCTGAAGAAAGCATGCCTATGGCTATGATGATGTTTACTGCAGGATTCAATCCCAGAAGTAACAACTCTTCCACTCATTCTGCACCTTGCTCATTTCAGTCCGTAGGAGGATTTGTAGGAGGATATAGCAATGCTCTTTTTTCACTTCATGCTTCAAGTATTTTGACCAGACAACAATTAATGCTTCACAATCACCTCCAAAAGGGTGGAAGATAG 2376 0.4634 MSRSPMVEKKLAAGRVVAVAIENNKTSQLAVKWAVDNLVPKDERLHLVHVIQRESTRNDMSEDVAAINECKELFDTFRVFCNRKNIECKEILLEDMDISKALIDGISAHSIELLVLGAASRSGLVRRFRTADVPSTVSKGAPQFCTVYTIAKGKISTVRNATGSLAAKTPAPAPASAPPPTRNQLQPHSHPGRSPERIDQLSSARNYPPRPSGDKPPFGSGNRIHALDDDDMMISPFSRAGHRYESSGHDCDISFVCNGRPNADRMFHSMYDDLDSGTGARLSYGSDYDARSYGSSYSGPKSIDMNSPHDQDNFSFTSSQSSGIGSLRLSDQTDDVEAEMRRLKLELKQTMEMYSSACKEALTAKEKALELQRSKMEEQKKLEEARIAEEAAMSLVEKEKEKSRVALMAVEASQKIAALEAHKRMSAESEGQKKKSDDSFSHTARYRRYTIEEIEEATKDFSASLKIGEGGYGPVAIKVLKPDAAQGRAQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRKGKAPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKIGDVGLARLVPPTVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQMVTAKPPMGLTHHVGRSIERGTFPEMLDPAVGDWPLEATLHFAKLALQCAEMRRKDRPDLGKVVLPELNKLRAFAEESMPMAMMMFTAGFNPRSNNSSTHSAPCSFQSVGGFVGGYSNALFSLHASSILTRQQLMLHNHLQKGGR* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1857 791 Gene3D Phosphorylase Kinase; domain 1 431 523 - -
Lja2g1857 791 Gene3D HUPs 4 150 IPR014729 -
Lja2g1857 791 MobiDBLite consensus disorder prediction 295 329 - -
Lja2g1857 791 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 129 - -
Lja2g1857 791 MobiDBLite consensus disorder prediction 166 226 - -
Lja2g1857 791 Coils Coil 359 388 - -
Lja2g1857 791 PANTHER OS02G0152300 PROTEIN 5 751 - -
Lja2g1857 791 Pfam Protein tyrosine and serine/threonine kinase 473 709 IPR001245 GO:0004672|GO:0006468
Lja2g1857 791 Gene3D Transferase(Phosphotransferase) domain 1 524 730 - -
Lja2g1857 791 ProSiteProfiles Protein kinase domain profile. 419 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1857 791 Coils Coil 333 353 - -
Lja2g1857 791 SUPERFAMILY Protein kinase-like (PK-like) 438 710 IPR011009 -
Lja2g1857 791 SMART serkin_6 461 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1857 791 Pfam Universal stress protein family 15 142 IPR006016 -
Lja2g1857 791 MobiDBLite consensus disorder prediction 295 333 - -
Lja2g1857 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672|GO:0006468
Lja2g1857 791 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 5 751 - -
Lja2g1857 791 CDD STK_N 16 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1857 Lja-Chr2 19185214 19191241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1857 9 751 Receptor kinase-like Gene Family AT1G78940 53.735 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja2g1857 PK_Tyr_Ser-Thr 6.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1857 - - cam:101511100 988.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1857 2 19185214 19191241 Lja2g1857 2 19185214 19191241 ECH
Lja4g0291 4 2273038 2278346 Lja2g1857 2 19185214 19191241 PCT