Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1856 ATGGCACTCATCAGTGGTTTAACTTTCACATTCTTATTATGCATTGTTGCATCATCTTATGCTGCTGATCCAGACACAGAATCACTTTTAAAATTAAAAGCTGCCTTGCAAAACACCAATGCAGCATTGTCCTCATGGAATGAATCAATTGTTCCACCATGCACTGGTGATAATGGCAATTGGTATGGTGTTCTGTGCTACCAAGGGCATGTTTGGGGCTTGCAGCTGGAGAATATGAGGCTAAAGGGGACAATTGATTTGGACTCTCTCAATGATTTGCCTTATCTCAGAACCATAAGCTTCATGGATAATGATTTTGACAACACATGGCCTGAGCTGAACAAGATAGTGGGTTTGAAGAGCCTTTACCTCTCAAATAACAAGTTTGCTGGGGAGGTTCCTGATGATGCTTTTGAGGGTATGCAATGGTTGAAGAAAGTTTACTTGTCAAACAACCAGTTCATAGGTTCTATTCCAAGTTCATTAGCTTCCTTGCCAAGGCTTTTGGAGTTGGGGTTGGAGGGAAACAAGTTCACTGGCCACCTTCCCAAATTTCAGCAAAGTCTTAAATCATTCAGTGTAGCTAATAATCAATTAGAGGGAGAAATACCAGCCAGTCTTAGTAAGATGCCAGCTTCATCATTTTCTGCAGGTAATGCAGGGCTATGTGGAGCTCCATTAGGTGCATGCCCCTCCAAAAAGCTATCAAGGGTGAGTGTTATTGTGGTTGTGGTTCTTGCTTGTGTGGCGGCACTGTTTGTGATTGGAGCAGTGATATTTATCCTTCGTCGAAGAAGAAAACAAGGACCTGAACTGTCCGCAGAGAGTCGACGTAGCAACCTCGAAAAGAAAGGAATGGAAGGGAGGGAATCAGTAGCAGATGATAGAAGTGAAAGGTCTGCAGGGTCCGGATCCTCCGGCAACAGCAGAAAACTGGACAGCATGAAGTTATCTTTTGTGAGGGATGATAGAGAGCAGTTTGATATGCAAGAACTGCTGAGAGCCAATGCTGAGATTTTGGGTAGTGGTTGTTTCAGTTCTTCCTACAAGGCTTCTTTGTTAAATAGGCCAACCGTGGTGGTGAAGAGATTCAAGCAAATGAACAATGTTGGGAGGCAAGAGTTTCAGGAGCACATGCTTAGGATAGGAAGGTTGGATCATCCTAATCTTCTCCCTCTTGTGGCTTACTACTACAGAAAGGAGGAGAAGCTCGTGATTACTGACTTTGTTCAGAAAGGCAGCTTGGCTGTTCGCCTTCACGGACACCAATCTCTAGGAGAACCAAGTCTTGATTGGCCAACGCGGTTGAAGATTGTGAAAGGCACAGCAAAAGCTCTTGAATATCTGTACAAGGAGATGCCAAGTCTAATTGCACCACATGGACATCTAAAATCCTCCAATGTTCTTCTGAGTGAGACTTTGGAGCCAAAACTGAATGACTATGGGTTGGTACCAGTCATAAACCAGGATCTTGCTCCTGATATCATGGTGGCCTACAAGTCCCCAGAGTATTTAGAGCATGGTAGAATCACAAAGAAGACTGATGTGTGGAGTCTTGGTATACTGATCTTGGAGATTCTCACAGGAAAGTTCCCTGCTAATTTTGTACAAGGTAGAGGGAGTGAGGGGAGTTTAGCAGATTGGGTAGAATCTGTTGTCCCTGGAGAGTGGAGTAGTGAGGTGTTTGATCCAGAGATGGAGCAAATTAGAAGCAGTGAGGGGGAAATGGTGAAGCTTTTGAAGATTGCATTGGCTTGTTGTGAAGTGGATGTGGAAAAGAGATGGGATTTGAAAGAAGCTGTGGAGAGAATTCAAGAGGTGAAGGAAAGAGATAATGATGAGGATTTCTATTCTTCTTATGCTAGTGAAGCTGACATGAAGTCTTCAAAGTCTTCAAAAGCTTTGTCTGATGAATTTAATTTCCCCATTAATGGTTGA 1938 0.4334 MALISGLTFTFLLCIVASSYAADPDTESLLKLKAALQNTNAALSSWNESIVPPCTGDNGNWYGVLCYQGHVWGLQLENMRLKGTIDLDSLNDLPYLRTISFMDNDFDNTWPELNKIVGLKSLYLSNNKFAGEVPDDAFEGMQWLKKVYLSNNQFIGSIPSSLASLPRLLELGLEGNKFTGHLPKFQQSLKSFSVANNQLEGEIPASLSKMPASSFSAGNAGLCGAPLGACPSKKLSRVSVIVVVVLACVAALFVIGAVIFILRRRRKQGPELSAESRRSNLEKKGMEGRESVADDRSERSAGSGSSGNSRKLDSMKLSFVRDDREQFDMQELLRANAEILGSGCFSSSYKASLLNRPTVVVKRFKQMNNVGRQEFQEHMLRIGRLDHPNLLPLVAYYYRKEEKLVITDFVQKGSLAVRLHGHQSLGEPSLDWPTRLKIVKGTAKALEYLYKEMPSLIAPHGHLKSSNVLLSETLEPKLNDYGLVPVINQDLAPDIMVAYKSPEYLEHGRITKKTDVWSLGILILEILTGKFPANFVQGRGSEGSLADWVESVVPGEWSSEVFDPEMEQIRSSEGEMVKLLKIALACCEVDVEKRWDLKEAVERIQEVKERDNDEDFYSSYASEADMKSSKSSKALSDEFNFPING* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1856 645 SUPERFAMILY L domain-like 24 214 - -
Lja2g1856 645 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Lja2g1856 645 MobiDBLite consensus disorder prediction 271 297 - -
Lja2g1856 645 MobiDBLite consensus disorder prediction 623 645 - -
Lja2g1856 645 MobiDBLite consensus disorder prediction 271 311 - -
Lja2g1856 645 Gene3D Ribonuclease Inhibitor 188 230 IPR032675 -
Lja2g1856 645 Gene3D Ribonuclease Inhibitor 24 186 IPR032675 -
Lja2g1856 645 PANTHER LRR RECEPTOR-LIKE KINASE 9 620 - -
Lja2g1856 645 MobiDBLite consensus disorder prediction 623 639 - -
Lja2g1856 645 Pfam Leucine rich repeat N-terminal domain 22 66 IPR013210 -
Lja2g1856 645 Gene3D Phosphorylase Kinase; domain 1 300 409 - -
Lja2g1856 645 SUPERFAMILY Protein kinase-like (PK-like) 338 607 IPR011009 -
Lja2g1856 645 ProSiteProfiles Protein kinase domain profile. 334 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1856 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 620 - -
Lja2g1856 645 Gene3D Transferase(Phosphotransferase) domain 1 410 630 - -
Lja2g1856 645 Pfam Protein kinase domain 337 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1856 Lja-Chr2 19176967 19180417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1856 12 639 Receptor kinase-like Gene Family AT5G35390 52.769 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja2g1856 Pkinase 1.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1856 - - lja:Lj2g3v0914400.1 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0292 4 2281428 2284894 Lja2g1856 2 19176967 19180417 PCT