Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1848 ATGTTGGAAGGTGGTGCGAAATTCCCTGGAATGATAGACCTCAACAAAACTAATAATAACATTTACGATTTCTCTCAAGGCTTTTACCATAAGCTTGAGGACACCAATATGTCAATTGACAGCTTGCAAACAAGTAATGGTGGTGGATCTGTTGCAATGTCTGTTGATAATAGCAGTGTTGGATCCAATGATTCCCATACTCGTATATTGAATCACCAAGGGTTGAAGAGGCATGCCCATGATAACTACTCTGTTGCACACAGTGTCAATCACCGAGGAAGAGTCACGCATGCTTTGAGTGGTGATGCTCTGGCTCAAGCTCTAATGGACAGTAATAGCCCCACTGAGGGGCTTGACAATTTTCATGAGTGGACAATTGATCTGAGGAACCTTAGTATGGGTGAGGCTTTTGCTCAAGGAGCTTTTGGGAAACTGTACAGAGGTACGTACAACAATGAAGAAGTTGCTATCAAAATCTTGGAGAGGCCTGAAAATGATCTGGCAAAGGCTCAATTGATGGAACAACAGTTTCAGCAGGAGGTCATGATGCTGGCTACACTAAAGCACCCTAACATAGTTCGTTTTATTGGTGCATGCCGTAAGCCAATGGTGTGGTGCATTGTTACAGAGTATGCCAAAGGGGGTTCAGTTCGACAGTTTTTAATGAAGCGTCAAAACCGAGCAGTCCCTCTCAAGCTGGCTGTCAAACAAGCTTTGGATGTTGCAAGAGGGATGGCATATGTTCATGGGCTTGGGTTGATCCATAGAGACTTGAAGTCCGATAATCTTCTGATTTTTGGTGACAAATCAATTAAAATTGCTGACTTTGGAGTGGCGCGGATTGAGGTGCAAACTGAAGGAATGACACCTGAGACTGGGACATACCGTTGGATGGCTCCGGAAATGATCCAGCATAGGCCTTACACCCAAAAAGTGGATGTATATAGCTTTGGGATTGTTCTATGGGAATTGATCACTGGAATGCTTCCATTTCAGAACATGACAGCAGTGCAGGCAGCATTTGCAGTCGTGAACAAAAATGTTCGCCCAATCGTCCCCAATGACTGCTTACCTGTTCTTCGTGAGATCATGACAAGGTGCTGGGATCCCAACCCTGATGTCAGGCCACCGTTCGCTGAAATTGTAGAGATGCTTGAGAACGCCCAGACTGAGATCATGATGACTGTTCGGAAGGCCCGTTTCAGGTGTTGCATGACCCAGCCAATGACCACTGACTGA 1239 0.4528 MLEGGAKFPGMIDLNKTNNNIYDFSQGFYHKLEDTNMSIDSLQTSNGGGSVAMSVDNSSVGSNDSHTRILNHQGLKRHAHDNYSVAHSVNHRGRVTHALSGDALAQALMDSNSPTEGLDNFHEWTIDLRNLSMGEAFAQGAFGKLYRGTYNNEEVAIKILERPENDLAKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLMKRQNRAVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKNVRPIVPNDCLPVLREIMTRCWDPNPDVRPPFAEIVEMLENAQTEIMMTVRKARFRCCMTQPMTTD* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1848 412 SMART serkin_6 131 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1848 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Lja2g1848 412 CDD STKc_MAP3K-like 138 385 - -
Lja2g1848 412 PANTHER SERINE-THREONINE PROTEIN KINASE 2 403 - -
Lja2g1848 412 Pfam Protein tyrosine and serine/threonine kinase 132 385 IPR001245 GO:0004672|GO:0006468
Lja2g1848 412 Gene3D Transferase(Phosphotransferase) domain 1 214 408 - -
Lja2g1848 412 Gene3D Phosphorylase Kinase; domain 1 120 213 - -
Lja2g1848 412 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 403 - -
Lja2g1848 412 PRINTS Tyrosine kinase catalytic domain signature 312 334 IPR001245 GO:0004672|GO:0006468
Lja2g1848 412 PRINTS Tyrosine kinase catalytic domain signature 293 303 IPR001245 GO:0004672|GO:0006468
Lja2g1848 412 PRINTS Tyrosine kinase catalytic domain signature 356 378 IPR001245 GO:0004672|GO:0006468
Lja2g1848 412 PRINTS Tyrosine kinase catalytic domain signature 247 265 IPR001245 GO:0004672|GO:0006468
Lja2g1848 412 PRINTS Tyrosine kinase catalytic domain signature 209 222 IPR001245 GO:0004672|GO:0006468
Lja2g1848 412 ProSiteProfiles Protein kinase domain profile. 131 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1848 412 SUPERFAMILY Protein kinase-like (PK-like) 115 385 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1848 Lja-Chr2 19066454 19071386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1848 24 412 MAP Kinase Kinase Kinase AT2G24360 79.487 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja2g1848 PK_Tyr_Ser-Thr 1.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1848 - - gmx:100788536 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0298 4 2403817 2408368 Lja2g1848 2 19066454 19071386 PCT