Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1843 ATGATGAAGCTATTAATGGCCAAAAAATATGAGGGACCTGCAATAGGAATTGATTTAGGCACTACCTACTCATGTGTTGCTATATGGCAAGAACAGAACAATCAAGCTGAGATCATTCATAATGAACAAGGAAACAGAACCACTCCTTCCTTGGTTGCTTTCACTGATACACAAAGCTTGATCGGTGATGCTGCCAAAAATCAGGCTGCAACAAACCCATCAAACACTGTCTTTGATGCAAAGAGGTTGATTGGAAGGAAATACAGTGATTCAGTTGTTCAGGAAGATGTTAAGCTCTGGCCTTTTCAGGTCATTGCTGGAACTGATGACAAACCCACTATTGTTGTTAAGTACAAAGGTGAGGAAAAATACCTTGTTCCTGAAGATATCTCATCCATGGTTCTCACAAATATGAAGGAGATTGCTGAGGCCTTTTTGGGGTCACCTGTAAGGAATGCAGTTATCACTGTGCCTGCTTATTTCAATGACTCTCAGCGAAAAGCCACCAAAGATGCCGGAGCTATTGCTGGCCTTGATGTTATGCGGATAATCAATGAACCAACCGCTGCAGGTCTCGCATATGGCCTTCAAAAGAAATCTCGTTTTGATGGTAAGCGGAATGTTTTCATCTTTGATCTTGGTGGCGGCACTTTTGATGTGTCTATTCTCACAATTGAGGATGATAGCTTCCAAGTGAAAGCCACTGCTGGTGATACTCACCTTGGAGGAGAGGACTTTGATAACATACTGGTGGACCATTTTGTTAAGGAGTTTAAGAGGAAGCACAAGAAGGACATTAGTGGGAACCCAAGAGCCTTAAGGAGGTTGAGAAGTGCGTGCGAGAAGGCAAAGAGGACACTCTCATTTGCCACTGATACCACAATTGAGGTAGATGCTTTATTTGAGAGCACTGACTTGTGCTCAGCAATTACTCGCGCCAAATTTGAGGAACTGAACATTGATCTCTTTAAAAAGTGTATGGAGACAGTTGAGAGGTGTCTTGAAGACTCTAAGATGGACAAGAGTGACATAGATGATGTTGTTCTGGTTGGTGGTTCTTCTAGGATTCCCAAAGTGCAGCATCTATTGCAAGATTTTTTCAATGGGAAGGAACTATGCAAGGGCATCAACTCTGATGAGGCTGTTGCTTATGGTGCAGCTGTTCAGGCTGCTTTGTTGACTGATGGCGTAATGAATGTTCCAAACTTAGTGCTTTTGGATGTCACACCTCTTTCACTTGGCACATCTGTAAAAGGAGATGTCATGAGTGTGGTCGTTCCTAGGAACACTACCATTCCTGTGAAGAAGACACAAGGATACATTACAATTGAAGATAACCAATCCAGAGTCTTGATTGAGGTTTATGAGGGTGAGAGAACAAGAGCCAGTGATAACAATTTGTTGGGTTCTTTTTATCTTACTGGCCTTACTCCTGCTCCTCGTGGCTATCCTTATGATGTATGTTTTGCTATAGATGAAAATGGCATTCTAATTGTTTCTGCTGAGGAAAGAACCACTGATAATAAGAATGAGATAACCATAACCAATGAAACAGACAGGCTGTCAGCTAAAGAAATCAAAAGAATGATTCAAGAAGCTGAGAATCATGAGGTTGATGATATGAAGTTCAAGAACAGGGTTACAGCAATGAATGATCTTGATCTTTACCTTTACAAGATGAACAAAAGTATGAAAGATAAGTGTGTCAGTTCTAAGCTTCCCTCAATAGTGCAAGATAAGATCAATTCAGCTATTGTAAAGGGCAAAAGTTTGCTTGATGATGGCCAGCAGCTAGAGACATCTGTATTTGTTGAGTTTCTAATGGAGCTCAAGAGCATTTTTGAACCTGCTATGGCCAAGAAATCAATTGCTACTAGGACCTGGGGCAAGTTGAAGAAGCTTATATAG 1908 0.4125 MMKLLMAKKYEGPAIGIDLGTTYSCVAIWQEQNNQAEIIHNEQGNRTTPSLVAFTDTQSLIGDAAKNQAATNPSNTVFDAKRLIGRKYSDSVVQEDVKLWPFQVIAGTDDKPTIVVKYKGEEKYLVPEDISSMVLTNMKEIAEAFLGSPVRNAVITVPAYFNDSQRKATKDAGAIAGLDVMRIINEPTAAGLAYGLQKKSRFDGKRNVFIFDLGGGTFDVSILTIEDDSFQVKATAGDTHLGGEDFDNILVDHFVKEFKRKHKKDISGNPRALRRLRSACEKAKRTLSFATDTTIEVDALFESTDLCSAITRAKFEELNIDLFKKCMETVERCLEDSKMDKSDIDDVVLVGGSSRIPKVQHLLQDFFNGKELCKGINSDEAVAYGAAVQAALLTDGVMNVPNLVLLDVTPLSLGTSVKGDVMSVVVPRNTTIPVKKTQGYITIEDNQSRVLIEVYEGERTRASDNNLLGSFYLTGLTPAPRGYPYDVCFAIDENGILIVSAEERTTDNKNEITITNETDRLSAKEIKRMIQEAENHEVDDMKFKNRVTAMNDLDLYLYKMNKSMKDKCVSSKLPSIVQDKINSAIVKGKSLLDDGQQLETSVFVEFLMELKSIFEPAMAKKSIATRTWGKLKKLI* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1843 635 SUPERFAMILY Actin-like ATPase domain 13 198 IPR043129 -
Lja2g1843 635 Gene3D Actin; Chain A, domain 4 242 325 - -
Lja2g1843 635 ProSitePatterns Heat shock hsp70 proteins family signature 1. 17 24 IPR018181 -
Lja2g1843 635 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 398 550 IPR029047 -
Lja2g1843 635 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 549 621 IPR029048 -
Lja2g1843 635 Gene3D - 78 133 - -
Lja2g1843 635 Gene3D - 15 391 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 376 396 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 13 26 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 344 360 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 482 498 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 216 226 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 43 55 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 153 173 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 402 421 - -
Lja2g1843 635 PRINTS 70kDa heat shock protein signature 65 73 - -
Lja2g1843 635 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 398 554 IPR029047 -
Lja2g1843 635 Gene3D - 551 622 IPR029048 -
Lja2g1843 635 Pfam Hsp70 protein 14 611 IPR013126 GO:0005524|GO:0140662
Lja2g1843 635 Coils Coil 273 293 - -
Lja2g1843 635 Gene3D - 199 373 - -
Lja2g1843 635 PANTHER HEAT SHOCK PROTEIN 70KDA 9 621 IPR013126 GO:0005524|GO:0140662
Lja2g1843 635 PANTHER HEAT SHOCK 70 KDA PROTEIN 9 621 - -
Lja2g1843 635 SUPERFAMILY Actin-like ATPase domain 205 393 IPR043129 -
Lja2g1843 635 ProSitePatterns Heat shock hsp70 proteins family signature 2. 210 223 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1843 Lja-Chr2 18973817 18977552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1843 6 620 Calmodulin-binding Proteins AT3G12580 65.640 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1843 K03283 - gmx:102667578 855.899