Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1842 ATGGCCATAAAATATGAGGGTCCTGCAATAGGAATTGATTTAGGCACCACCTATTCATGTGTTGCTGTTTGGCAGGAACAGAACAATAGGGCTGAGATCATTTTCAACGAACAAGGAAATAAAACTACTCCTTCCTTTGTTGCTTTCACTGATACTCAAAGATATGCAAAGAGGTTAATTGGTAGGAAATACAACGATTCAGTTGTTCAGGATGATGTTAAGCTCTGGCCCTTTAAGGTCATTGCTGGTAGTGATGACAAACCCACTATTGTTGTTAAGTACAAGGGTGAAGAAAAGCACCTTGTTCCTGAGGAAATCTCATCCATGGTTCTCACAAAAATGAGGGAGACTGCTGAGGCATTTTTAGGGTCACCTATCAAGAATGCTGTGGTTACCGTGCCGGCTTATTTCAATGATTCCCAACGAAAAGCCACCAAAGATGCTGGTACTATTGCTGGCCTCAATGTTCTGCGGATAATCAACGAACCAACGGCTGCAGGTCTTGCGTATGGCCTTCAGAAGAAATCTAGTTTTTCTGGAAAGCGAAATGTTTTCATATTTGATCTCGGTGGTGGAACTTTTGATGTGTCTCTTCTCACTATTGAGGATGATAGCTTTGAAGTGAAGGCCACTGCTGGTGATACTCACCTTGGAGGAGAGGACTTTGACAACAGAATGGTGAAACATTTTGTCAAGGAGTTTAAGAGGAAGCACAAGAAGGACATTAGTGGGAACCCAAGAGCCTTAAGGAGGTTGAGAAGTGCTTGCGAGAGGACAAAAAGAACACTTTCATTCGCTGTAGATACCACCATTGAGGTAGATGCTTTATTTGAGAGCATTAACTTCTCTTCTTCAATTACTCGTGCCAGATTTGAGGAACTCAACGCGGATCTATTTACAAAGTGTATGGAGACAGTTGAGAGGTGTCTTAATGATTCTAAGATGGACAAGAGTGATATAGAAGATGTTGTCCTTGTTGGTGGATCTTCTAGGATTCCCAAAGTTCAGGAGCTTTTGCAGGATTTTTTTGAAGGTAAGGAACTATGCAAGGGGATCAATCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAAGCTGCTTTGTTCAGTGAATGTGCCATTAAGAATGTTCCGAACTTGGTGCTATTGGATATTACCCCGTTGTCTTTAGGTTGGGGGCTAATAAGAGATCGCATGAGTGTAGTGATTCCTAGGAATACTACTATTCCTATAAAGATGACAAAGGATTATGTTACAGTTAAAGATAACCAATCTTATGTCTTGATTAAGGTTTATGAGGGTGAGAGAACTAGAGCAAGTGATAACAATTTGTTAGGCTCTTTTCGTCTTACTGGCCTCCCTCCTGCTCCTCGTGGCCATCCTTTTGATGTATGCTTTTCTATAGATGAAAATGGCATCCTAACTGTTTCTGCTGTGGAAAAAACCACTGGAAATAAGAATGAGATTACCATAACCAATGAAACAGACAGGCTGTCAGCTAAAGAAATCCTAAGATTGATTCAAGAAGCTGAGAATTACAAGGCTGAAGATATGAAGTTTAAGAAGAAAGTGAAAGCAATGAATGCTCTTGATGATTACGTTTACAAGATGAAAAAGCTTATGAAGGATAAGTGTGTCAGTTCTAAGCTTTCTCCAATGGACCAAGTTATGATCAAGTCAGCAATTCTAAAGGGCCAAGATTTGCTTGTTGATGACCAGCAGGAAGAGAAGTTTGTGTTTGTGGACTTATTAAGGGAGCTTAAGAGCATATTTGAACCTGCAATTGTCAAGATCAACAATGCTTGGACAGATGTGTATAGTGATGAGGATTAA 1833 0.4059 MAIKYEGPAIGIDLGTTYSCVAVWQEQNNRAEIIFNEQGNKTTPSFVAFTDTQRYAKRLIGRKYNDSVVQDDVKLWPFKVIAGSDDKPTIVVKYKGEEKHLVPEEISSMVLTKMRETAEAFLGSPIKNAVVTVPAYFNDSQRKATKDAGTIAGLNVLRIINEPTAAGLAYGLQKKSSFSGKRNVFIFDLGGGTFDVSLLTIEDDSFEVKATAGDTHLGGEDFDNRMVKHFVKEFKRKHKKDISGNPRALRRLRSACERTKRTLSFAVDTTIEVDALFESINFSSSITRARFEELNADLFTKCMETVERCLNDSKMDKSDIEDVVLVGGSSRIPKVQELLQDFFEGKELCKGINPDEAVAYGAAVQAALFSECAIKNVPNLVLLDITPLSLGWGLIRDRMSVVIPRNTTIPIKMTKDYVTVKDNQSYVLIKVYEGERTRASDNNLLGSFRLTGLPPAPRGHPFDVCFSIDENGILTVSAVEKTTGNKNEITITNETDRLSAKEILRLIQEAENYKAEDMKFKKKVKAMNALDDYVYKMKKLMKDKCVSSKLSPMDQVMIKSAILKGQDLLVDDQQEEKFVFVDLLRELKSIFEPAIVKINNAWTDVYSDED* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1842 610 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 376 531 IPR029047 -
Lja2g1842 610 ProSitePatterns Heat shock hsp70 proteins family signature 2. 186 199 IPR018181 -
Lja2g1842 610 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja2g1842 610 SUPERFAMILY Actin-like ATPase domain 180 369 IPR043129 -
Lja2g1842 610 Gene3D - 175 349 - -
Lja2g1842 610 Gene3D - 55 109 - -
Lja2g1842 610 SUPERFAMILY Actin-like ATPase domain 9 174 IPR043129 -
Lja2g1842 610 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 375 526 IPR029047 -
Lja2g1842 610 Pfam Hsp70 protein 9 576 IPR013126 GO:0005524|GO:0140662
Lja2g1842 610 Gene3D - 10 54 - -
Lja2g1842 610 Gene3D - 527 600 IPR029048 -
Lja2g1842 610 Gene3D - 110 367 - -
Lja2g1842 610 PANTHER HEAT SHOCK PROTEIN 70KDA 4 599 IPR013126 GO:0005524|GO:0140662
Lja2g1842 610 Gene3D Actin; Chain A, domain 4 219 301 - -
Lja2g1842 610 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 599 - -
Lja2g1842 610 ProSitePatterns Heat shock hsp70 proteins family signature 3. 323 337 IPR018181 -
Lja2g1842 610 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja2g1842 610 PRINTS 70kDa heat shock protein signature 129 149 - -
Lja2g1842 610 PRINTS 70kDa heat shock protein signature 352 372 - -
Lja2g1842 610 PRINTS 70kDa heat shock protein signature 459 475 - -
Lja2g1842 610 PRINTS 70kDa heat shock protein signature 38 50 - -
Lja2g1842 610 PRINTS 70kDa heat shock protein signature 192 202 - -
Lja2g1842 610 PRINTS 70kDa heat shock protein signature 379 398 - -
Lja2g1842 610 PRINTS 70kDa heat shock protein signature 320 336 - -
Lja2g1842 610 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 526 601 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1842 Lja-Chr2 18970567 18972547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1842 1 598 Calmodulin-binding Proteins AT3G12580 65.210 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1842 K03283 - gmx:102667578 811.986