Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1823 ATGGCGTTACAGAACATTGGCGCTGGAAACAGCGATGATGCCTTCTACAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAGACAAATATTGTCAATATGGTTGATATTGCCAAGGCGTTGGCGAGGCCGGCCGCGTACACGACCAAGTACTTTGGTTGTGAGCTTGGAGCTCAGTCCAAATTTGATGAGAAAAATGGGACATCTCATGTGAATGGGGCACATGAAACTGCGAAACTTGCTGCTCTTTTGGAGAATTTCATCAAGAAGTATGTCCAGTGTTATGGTTGTGGAAACCCTGAAACTGAGGTACTGATCACGAAGAGCCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCAGATGTGGATATGAGAGACAAGCTGACTACCTTTATTGTGAAAAACCCTCCTGAAACAAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGATTGAAGGAAGTCTCTTCCACATCCACGGGTGAGACTGCAAAACCCAGCTCTACAAAGAAGAAATCAAACAGCTCTGATGAAGACCGTACTTCTCCACCTCGTGGTCAAGTTGATGAGAATGAAGAGTCTCCTGATGAAGAAGATGATGGTGATGTACAATGGCTAACAGACACCTCACTTGAGGCTGCTCGCCAACGCATCCAAGAGCAGTTAAGTGCTGTAACAGCTGATATGGTCATGCTCTCCACAAATGAGGATGAGAAGAAGGATAAATCAGCAAGCAAGGCAAGCAATGGTTCTGAGAATCCCTCCACAAATGGGCATGAGAAGAAGGAGAAAGCAGCAAGCAAGGTAGGCAATGGCTCTGAGAATCTCTCCACAAATGGGCATGAGAAGAACGGAAAAGCAGCAAGCAAGGTAGGCGATGGTTCTGAAAATGGCAACTCAATGCACTACATGAAACTGGTCGGAGAACTGAAAGCAAATTTGAACAAAGGTATCAATGCGAAAGGATTGCAGTCCCTCATGGCTGGACTTCCTGCATCTGCTCAAGAAAAGACCATTGCTCTGCTTGAGGCCTTATTTGAGGGCATTGAGAAAGGGTTTGGGAAAGAAGTGAACAGGAAGAAGAGCTACCTTGCTGCTGCAGCTTCCATGGAGGGGGGTTCGCAGATACTATTGCTTCAAGGCATTGAGGCATTTTGTCTCAAGTCCACTTCCAATGCTACAAAGGAAATTGCCATTGTTCTGAAGGCTCTCTATGATGCTGATGTGTTGGAGGAAGAGCACATATTGCAGTGGCATCAAGAAGGGCTGAAGGGCGAGAATAAGGACTCTCACATATGGAAGAATGCCAAACCTTTGATCGATTGGCTTCAGAGTGCTGAATCAGAATCAGAGGAAGAGTAA 1407 0.4556 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKNGTSHVNGAHETAKLAALLENFIKKYVQCYGCGNPETEVLITKSQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPETKKGSKDKKAMRRAEKERLKEVSSTSTGETAKPSSTKKKSNSSDEDRTSPPRGQVDENEESPDEEDDGDVQWLTDTSLEAARQRIQEQLSAVTADMVMLSTNEDEKKDKSASKASNGSENPSTNGHEKKEKAASKVGNGSENLSTNGHEKNGKAASKVGDGSENGNSMHYMKLVGELKANLNKGINAKGLQSLMAGLPASAQEKTIALLEALFEGIEKGFGKEVNRKKSYLAAAASMEGGSQILLLQGIEAFCLKSTSNATKEIAIVLKALYDADVLEEEHILQWHQEGLKGENKDSHIWKNAKPLIDWLQSAESESEEE* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1823 468 MobiDBLite consensus disorder prediction 145 218 - -
Lja2g1823 468 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lja2g1823 468 Gene3D - 3 104 - -
Lja2g1823 468 MobiDBLite consensus disorder prediction 186 205 - -
Lja2g1823 468 Pfam eIF4-gamma/eIF5/eIF2-epsilon 390 468 IPR003307 GO:0005515
Lja2g1823 468 MobiDBLite consensus disorder prediction 251 312 - -
Lja2g1823 468 SMART 542_3 376 464 IPR003307 GO:0005515
Lja2g1823 468 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lja2g1823 468 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lja2g1823 468 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lja2g1823 468 SUPERFAMILY ARM repeat 321 462 IPR016024 -
Lja2g1823 468 Gene3D - 105 145 - -
Lja2g1823 468 ProSiteProfiles W2 domain profile. 308 468 IPR003307 GO:0005515
Lja2g1823 468 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 468 IPR045196 GO:0003743|GO:0006413
Lja2g1823 468 MobiDBLite consensus disorder prediction 285 299 - -
Lja2g1823 468 Gene3D - 319 468 - -
Lja2g1823 468 MobiDBLite consensus disorder prediction 148 171 - -
Lja2g1823 468 CDD W2_eIF5 320 461 - -
Lja2g1823 468 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1823 Lja-Chr2 18816290 18817750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1823 1 461 Eukaryotic Initiation Factors Gene Family AT1G36730 55.579 5.04e-170 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1823 K03262 - gmx:100796565 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1823 2 18816290 18817750 Lja2g1823 2 18816290 18817750 ECH