LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g1809	ATGCTCAAATCACTCTCTCTAACCCACCTCTCTTCTCTCTTACCCCACACTCGTCCCATGTTTTCTTCCACTTCCAGATTGCTCTGTCACTGCCAATTCCTCCATCTACCTCCATCATCGCCATTCACCAAACCACAATGCTCCAGATTCCTCTCCACCAATCCCACCCCATACCCACTCCAATACGAGATGATCATCAACCGCCCCGACACCCCACAAACTCGCCGACGACCTGTTCGACAAAATGCCAATGACGCCCCTTCCGAACCGGACCAACCCGACGACTCGCTGCAGGGATGGGCCAGCGGTAAACTAGCTTCAGACGCCGAATTGGACCGACCCGGGTCGTCGAAATTGGAACTTGACAAGGCTAAGAGGAAGTACTACAATAAGCGGAGGAAGAGGATGTATGGGTCGGATTCTGAGGATGAGGGGAGGAGGCATGAGGATGGGTTCGTGGAGCTAAAACCGGAGGTTGTGGAGCTTCCTACAATGCACAAGAGGGAGGAGGAGTTGTATTTCTATGATGCATTTGCTTATCCGTGGGAGAAGGAGAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTATTTCCCTGATCAGTGTCTTGATAAGGCGTTTGTCGAACCGGGGCAGGTGAGTTCGAGTGCAAATGTGAGTGGTAAGGGGAAGGGTAAGAGCAGAGTTGGTGGGGTTGTTAAGGGGGAGAAGAAAGATGAGGAGGTTGATGGTGTTGGTGATGACAGGTTGGTGTTTTTTGAGGAGAAAAAGGAAGTGAAAGAAAAGGGTAAGGATCTTACCGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTGAAGAAAGCTCCTGGTAAGGATGGTCAAGTTGATGAGGCAGGGGAGCCATATTTTTCTTCAAGGAGGGCTGGACTCCCTCCCACTTGGGATGGTCCACATGGCACCGTGCTTTTGGTGAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCATTGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTATTGATCGTTTGTATTGGCAAAGCAACAAAAGTGGTAGACAGATATCAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTAGGTGAGGCTACTTCAACATGGGATGCTGATTCGCCAGTCATTCAACGCGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAAAGCTCTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCGATGTTCTCAGCTATTAAAGTGGGAGGTGAAAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGCATTGAACTTTCGCCTAGAAGAATTTCAATATTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTAACATGTTCAAAAGGAACATATATTCGGTCACTCTGCGCCGATTTGGGGAAGGCCCTTGGCAGCTGCGCCCATTTAACTGCTCTCCGAAGAGATTCAATCGGGCAATATTCAGCTGATGATGCATGGGAATTTCAAGAATTGGAAGAGGCTATTACCAAAAGTTATCTCTAA	1599	0.474	MLKSLSLTHLSSLLPHTRPMFSSTSRLLCHCQFLHLPPSSPFTKPQCSRFLSTNPTPYPLQYEMIINRPDTPQTRRRPVRQNANDAPSEPDQPDDSLQGWASGKLASDAELDRPGSSKLELDKAKRKYYNKRRKRMYGSDSEDEGRRHEDGFVELKPEVVELPTMHKREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFVEPGQVSSSANVSGKGKGKSRVGGVVKGEKKDEEVDGVGDDRLVFFEEKKEVKEKGKDLTEKKVEEFFKGLKKAPGKDGQVDEAGEPYFSSRRAGLPPTWDGPHGTVLLVNKPKGWTSFTVCGKLRRIVKVKKVGHAGTLDPMATGLLIVCIGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKKALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGQYSADDAWEFQELEEAITKSYL*	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g1809	532	MobiDBLite	consensus disorder prediction	76	91	-	-
	Lja2g1809	532	MobiDBLite	consensus disorder prediction	214	233	-	-
	Lja2g1809	532	Gene3D	Pseudouridine synthase	310	531	-	-
	Lja2g1809	532	MobiDBLite	consensus disorder prediction	65	100	-	-
	Lja2g1809	532	CDD	PseudoU_synth_EcTruB	315	526	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Lja2g1809	532	Pfam	TruB family pseudouridylate synthase (N terminal domain)	334	484	IPR002501	GO:0006396
	Lja2g1809	532	PANTHER	TRNA-PSEUDOURIDINE SYNTHASE	291	529	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Lja2g1809	532	SUPERFAMILY	Pseudouridine synthase	314	527	IPR020103	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Lja2g1809	532	Hamap	tRNA pseudouridine synthase B [truB].	312	532	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Lja2g1809	532	TIGRFAM	TruB: tRNA pseudouridine(55) synthase	314	523	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Lja2g1809	532	Pfam	tRNA pseudouridylate synthase B C-terminal domain	485	528	IPR032819	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g1809	Lja-Chr2	18618722	18623664	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g1809	315	506	NAC Transcription Factor Family	AT3G57150	34.375	6.75e-20	91.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g1809	K03177		-	qsu:112023951	696.427

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g1809	2	18618722	18623664	Lja2g1809	2	18618722	18623664	ECH