Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1806 ATGGGATCTGGCAATGAGGTTCATTCAGTTGGTGAGTTCAATTTAGATGCCAAGTGGCTTGTAGATCCCAAACAACTATTTGTTGGGCCAAAAATTGGGGAAGGTGCACATGCCAAAGTCTATGAGGGAAAGTATAAAAATCAGAATGTTGCTGTTAAGATTATCAATAAGGGAGAGACCCCGGAAGAGATTTCAAGGAGAGAGGGTCGGTTTGCTAGAGAGGTTGCTATGTTGTCGAGAGTTCAACACAAGAATCTGGTTAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTGACTGAACTTCTATTAGGTGGAACATTGCGCAAATATCTCATGAGTATGCGTCCAAAATGCTTGGATATTTGTGTGGCTGTTGGATTTGCTCTTGATATCGCCAGAGCAATGGAATGCTTACACGCCCACGGGATCATTCATCGTGACCTTAAACCTGATAACTTGATATTGACAGCAGATCATAAGACAGTCAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGGAACATATCGCTGGATGGCTCCAGAGCTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCATAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTGCCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCTAGTGCTGAAGACCTTCCAGAGGATCTAGCTCTGATTGTAACTTCATGTTGGAAGGAGGATCCCAATGACCGACCCAATTTCACTCAAATCATACAGATGCTCCTTCGATATCTCTGTACGGTTTCACCCACAGAGCCGGTTCTTCCGATGCGGATGATTTCACTTTCATCTGAGAATTCTGTGTTGCCACCGGAATCTCCTGGTACAAGTGCACTAATGCTTAGAAGAGATGACGCCGGAGAAACGCCAAAAGCCAACATGGAAGACAGGCCTAAAGGGATTTTCTTCTGCTTTAACCAGTGCTACTGA 1065 0.4385 MGSGNEVHSVGEFNLDAKWLVDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRREGRFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLMSMRPKCLDICVAVGFALDIARAMECLHAHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFTQIIQMLLRYLCTVSPTEPVLPMRMISLSSENSVLPPESPGTSALMLRRDDAGETPKANMEDRPKGIFFCFNQCY* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1806 354 SUPERFAMILY Protein kinase-like (PK-like) 18 317 IPR011009 -
Lja2g1806 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Lja2g1806 354 CDD STKc_MAP3K-like 32 286 - -
Lja2g1806 354 Gene3D Transferase(Phosphotransferase) domain 1 107 297 - -
Lja2g1806 354 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1806 354 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Lja2g1806 354 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1806 354 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Lja2g1806 354 PANTHER PROTEIN KINASE ATN1 1 331 - -
Lja2g1806 354 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Lja2g1806 354 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Lja2g1806 354 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Lja2g1806 354 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Lja2g1806 354 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Lja2g1806 354 PANTHER SERINE-THREONINE PROTEIN KINASE 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1806 Lja-Chr2 18591550 18595701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1806 9 354 MAP Kinase Kinase Kinase AT5G50180 77.746 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja2g1806 PK_Tyr_Ser-Thr 1.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1806 - - mnt:21403469 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2448 1 28233626 28235435 Lja2g1806 2 18591550 18595701 PCT