Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1805 ATGGCTAGAAGCTGGATTATTGACTTTGGATCATTTGCAAAGAAAGTGAAAAACACTAATCTGTCAACAGTTGATCAAATCAAGGACTGTGGAGCATATCTTGATTGTCCAAAATGTCATTATCGGATCGACAACAGTGATGTTTTTCCGGAGTGGCCTGGCTTTCCTGCTGGTGTAAAGTTTGATCCTTCTGATGTTGAACTTTTAGAACATTTAGCAGCAAAGCATTGTATTGGAGACAGAGTGGCACACATGTTCATCCATGAGTTTATCCCAACTCTAGAAGGAGATCAAGGTATTTGCTACACACATCCAGAAAATCTTCCAGGTGCCAGGAAAGATGGGAGCAGTGTCCATTTCTTTAACAGAACAGTTAACGCATACGCTACTGGACAAAGAAAGCGTAGAAAGATCCATCATCAACATGGTTTGACTCATGAGGAGCATGTGCGCTGGCACAAGACAGGTAAGACCAAACCTGTGATAGAAGATGGAGTGCATAAGGGATTCAAGAAGATCATGGTTCTTTATGTCAGCTCTCAGAAAAGGTCCAAGCCATATAAATCCAATTGGGTGATGCATCAGTACCATCTAGGAAGTGAAGAGGAAGAGAAGGATGGTGAATATGTGGTTTCAAAAGTTTTTTATCAACCGAACAAGCATACTGAGAAAAATGAGGAGAATCCAGTGGCTGAAGGTTCTGACATGGCGTCACGAACCGATCCAAGAACCCCAAATCCAAATCCTCCAAGTCGACCTCATACTGATATATATGTTGATTGTGATGACAATTTTGATGACAGTGAACTTCCATTACTCATCCAGGATGATGAGTGTGTACCTCAAGAATCACATGCCCCACCATCTGATGTAAAGAATGAGGACAATATGGGTGACTCTGCATGGTTAGCTGGTGAATCACAGGATGTAAGTTACTTTGATGACTTGGATGACATCGTACTATGCCAGGAGATGTTAGATTCTTCTGGTCTCTTCAATGATTCTGTATTGAACTCCTCCACTTTTAACGGTTTCACTGGTCATGCAAATGAGGGCCAACTTGGAATTTCTATCCAGGACACCTTGGAATTGGATACTCTTCTAGATTTTGACTTTTCTAATGAGCTGATTTGGCTTTTTTATATATTTTTTGGACCTACCACGTCGAAATTACAAGTGAAATTGGAAAAAGGGGGCATGAGAGATTCAAACTCAAGACTTGTAAGTAGCAAAGCATGCATTTAA 1245 0.408 MARSWIIDFGSFAKKVKNTNLSTVDQIKDCGAYLDCPKCHYRIDNSDVFPEWPGFPAGVKFDPSDVELLEHLAAKHCIGDRVAHMFIHEFIPTLEGDQGICYTHPENLPGARKDGSSVHFFNRTVNAYATGQRKRRKIHHQHGLTHEEHVRWHKTGKTKPVIEDGVHKGFKKIMVLYVSSQKRSKPYKSNWVMHQYHLGSEEEEKDGEYVVSKVFYQPNKHTEKNEENPVAEGSDMASRTDPRTPNPNPPSRPHTDIYVDCDDNFDDSELPLLIQDDECVPQESHAPPSDVKNEDNMGDSAWLAGESQDVSYFDDLDDIVLCQEMLDSSGLFNDSVLNSSTFNGFTGHANEGQLGISIQDTLELDTLLDFDFSNELIWLFYIFFGPTTSKLQVKLEKGGMRDSNSRLVSSKACI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1805 414 ProSiteProfiles NAC domain profile. 55 217 IPR003441 GO:0003677|GO:0006355
Lja2g1805 414 Pfam No apical meristem (NAM) protein 56 198 IPR003441 GO:0003677|GO:0006355
Lja2g1805 414 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 374 - -
Lja2g1805 414 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 374 IPR044799 GO:0003700
Lja2g1805 414 MobiDBLite consensus disorder prediction 220 261 - -
Lja2g1805 414 SUPERFAMILY NAC domain 40 217 IPR036093 GO:0003677|GO:0006355
Lja2g1805 414 MobiDBLite consensus disorder prediction 278 299 - -
Lja2g1805 414 Gene3D NAC domain 64 222 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1805 Lja-Chr2 18580483 18585391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1805 36 217 NAC Transcription Factor Family AT1G28470 57.143 5.84e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g1805 NAM 5.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1805 - - gmx:100780662 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1805 2 18580483 18585391 Lja2g1805 2 18580483 18585391 ECH