Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1796 ATGGAGAAAGTGGTTGTGCAAAACCTTTGGAATGGTGATGAAGAAGCTCAAATTCAAGCAGCTATGGAACTTAGTGGATTGTGCAGTAAGCAGAGACACAATTTGGCAGAAAGTGGAATCATGGTTCCTCTGGTTTCCATGCTTTATTCTGAAAACTATGAAGCCGTAGAAGCTTCTCTGTGTGCTCTTGTCAGCATTGCCTTTGGCAGTGAAAGAAACAAGATTCGGATTATCAAATCTGGAACTTTGCCTGTTTTGCTGAGTCTCCTCCACTGTCAAAGCCAAACAGTAGTACAATTGACAATAGCAGCAATGCTAACCCTCTCTTCTTGCAAAGCGAATAAGATAGCAATTGCTTCATCTGGGGCTGTCCAATTCTTGGTTGAATTTGTCAATAGCAGTATGAACAGCACACAGTCCCAGCTTGATGCTATAGCTACTCTCCACAACCTCACAACCTGCCAACAGATTGTTCCGTTGATAGTTTCTTCCGGCGTTACAATCTCCTTGCTTGAACTAATTCACAGCTCAGTAAAATCATCTTCATTGGTTGAGAAAGCTATTGGGTTGCTAGAAAATGTTGTCTCTTCATCAGAGAGTGCTCTTTGTGAGGCAGCTAGTACTAGTGGAGCAATTCAGATATTGGTTGAGACTATAGAAGATGGATCTTCACTGGGAAAAGAGCATGCTGTGAGTATCCTTCTCCTTATATGCCAAAGCTGCAGAGAAAAATACAGAGGATTGATTTTGACAGAGGGAGTGATGCCAGGATTGCTTCAGTTAAGCGTGGACGGTACACGGAGAGCCAAATCCATGGCTCGAGAATTGTTGTTGCTTCTAAGGGACTGTGCCTCAAATTATAGCTCAAGAGGTAGACAAATTAATCATGACCTTATAGAGAGGATAATGGAAGAAATTGATGCAGAAGGAGAGAAATTGGCAGATACTACTTTGAGGTTGGTAGAGGAGATGATTGCAAAGCTCAATACATAA 993 0.4199 MEKVVVQNLWNGDEEAQIQAAMELSGLCSKQRHNLAESGIMVPLVSMLYSENYEAVEASLCALVSIAFGSERNKIRIIKSGTLPVLLSLLHCQSQTVVQLTIAAMLTLSSCKANKIAIASSGAVQFLVEFVNSSMNSTQSQLDAIATLHNLTTCQQIVPLIVSSGVTISLLELIHSSVKSSSLVEKAIGLLENVVSSSESALCEAASTSGAIQILVETIEDGSSLGKEHAVSILLLICQSCREKYRGLILTEGVMPGLLQLSVDGTRRAKSMARELLLLLRDCASNYSSRGRQINHDLIERIMEEIDAEGEKLADTTLRLVEEMIAKLNT* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1796 330 Pfam Armadillo/beta-catenin-like repeat 29 67 IPR000225 GO:0005515
Lja2g1796 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Lja2g1796 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 200 IPR000225 GO:0005515
Lja2g1796 330 SUPERFAMILY ARM repeat 5 313 IPR016024 -
Lja2g1796 330 SMART arm_5 154 196 IPR000225 GO:0005515
Lja2g1796 330 SMART arm_5 28 68 IPR000225 GO:0005515
Lja2g1796 330 SMART arm_5 111 153 IPR000225 GO:0005515
Lja2g1796 330 SMART arm_5 198 239 IPR000225 GO:0005515
Lja2g1796 330 SMART arm_5 70 110 IPR000225 GO:0005515
Lja2g1796 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Lja2g1796 330 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 310 - -
Lja2g1796 330 Gene3D - 3 204 IPR011989 -
Lja2g1796 330 PANTHER U BOX DOMAIN-CONTAINING 1 310 - -
Lja2g1796 330 Gene3D - 205 313 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1796 Lja-Chr2 18399887 18401318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1796 5 292 U-box Gene Family AT3G54790 31.164 1.76e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1796 - - gmx:100778534 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1796 2 18399887 18401318 Lja2g1796 2 18399887 18401318 ECH