Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1791 ATGGAATCACCCGGCAACGACCATGTAGTTGGTGGCGGAGAATCCAACGACGTCGCCAGAACCTATTCTCACAGAGAAGACCACGACCAGCACCACAACTCTCAACCTCTCACCGGCGACGGTGCCAGTCCCGGAAAGATTTTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACAGATTCTGTTATCATGAAGGACAGGAAAACTGCTCAGCCTCGTGGGTTCGGGTTTATTACGTATGCGGATCCCTCTGTGGTTGATAAAGTCATCGAGGACACTCATATCATCAATGGCAAGCAAGTTGAAATTAAGCGGACGATACCAAGGGGAGCAGTTGGTTCTAAGGATTTTAAGACAAAGAAAATATTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTCACACGCTATGGAGAAGTCAAAGACAACCAAATAATGCGTGACCACTCCACCAATCGATCTCGTGGCTTTGGGTTTATCACCTTTGACTCGGAGGATGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGACTTTGCTGGAACTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCTACTCCATCATCCAAGCGCTATAATGACTCAAGGTCTTCGTACAGTAGTGGATATGGAGAAGCTTATGATGGCTTTGGTGGGAGCTATGGTGCTGCAGGTGGTTACAGATCTAGTGCTGCCTATGCTGGCAGGAGTGGTGCTTATGGTGGGTATGGAAGCGAGTTTGGTGGGTATGGAGGATATGCTGGAGCAATGGGGCCCTACAGAGGAGATCCTTCCCTTGGGTTTGCTGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGTGAGAGTTATGGGGCATACGGTGCTGGTGCTGCTGCTGGTGGGGGTTCTTCTGCCGCTGGTGCCTATCAAGGTGGCTATGATGCCAGCCTAGCGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGGAGTAGAGGTGGATATGGTGCTGGTCGATATCATCCTTATGGAAGATAG 1122 0.484 MESPGNDHVVGGGESNDVARTYSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEIKKAEPKKPNPPTPSSKRYNDSRSSYSSGYGEAYDGFGGSYGAAGGYRSSAAYAGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGGYGAGRYHPYGR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1791 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 121 IPR000504 GO:0003723
Lja2g1791 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 114 IPR000504 GO:0003723
Lja2g1791 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 204 IPR000504 GO:0003723
Lja2g1791 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Lja2g1791 373 SUPERFAMILY RNA-binding domain, RBD 128 241 IPR035979 GO:0003676
Lja2g1791 373 MobiDBLite consensus disorder prediction 204 229 - -
Lja2g1791 373 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 373 - -
Lja2g1791 373 SUPERFAMILY RNA-binding domain, RBD 39 123 IPR035979 GO:0003676
Lja2g1791 373 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 373 - -
Lja2g1791 373 Gene3D - 132 213 IPR012677 -
Lja2g1791 373 SMART rrm1_1 134 207 IPR000504 GO:0003723
Lja2g1791 373 SMART rrm1_1 46 117 IPR000504 GO:0003723
Lja2g1791 373 MobiDBLite consensus disorder prediction 24 43 - -
Lja2g1791 373 Gene3D - 45 124 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1791 Lja-Chr2 18352975 18356166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1791 45 245 Eukaryotic Initiation Factors Gene Family AT4G34110 26.829 5.90e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1791 K12741 K14314 gmx:100793209 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1791 2 18352975 18356166 Lja2g1791 2 18352975 18356166 ECH