Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1778 ATGCTCTTTGTTATCATCATGGCCTCTTCTAGCTATTCCAACAATTCTCCCTGTGCTGCCTGCAAGTTTCTGAGAAGGAAATGTATGTCAGATTGCATTTTCTCCCCTTACTTCCCACCAGAAGAGCCTCACAAGTTTGTGAATGTTCACAAGATATTTGGAGCAAGCAACGTGAGCAAGATCCTCAACGAAGTCCTGCCCCATCAGAGGGAGGATGCAGTGAACTCTCTGGCCTACGAAGCCGAAGCGCGCATCAAAGATCCTGTTTATGGCTGTGTTGGGGCCATCTCTGTGCTCCAAAGACAAGTCCTTAGGCTCCAAAAGGAACTTGATGCTGCAAACGCTGATTTGATCCGCTATAGTGCATGTAGTGAAACACCAACTACTCATCATGGTGGATCAGGTTTCTATTACCCTTGGAATAATCATGGCTAG 435 0.4644 MLFVIIMASSSYSNNSPCAACKFLRRKCMSDCIFSPYFPPEEPHKFVNVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKELDAANADLIRYSACSETPTTHHGGSGFYYPWNNHG* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1778 144 Coils Coil 96 116 - -
Lja2g1778 144 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 129 - -
Lja2g1778 144 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Lja2g1778 144 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Lja2g1778 144 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 10 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1778 Lja-Chr2 18146105 18147975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1778 7 121 AS2 family AT5G63090 86.087 7.86e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja2g1778 LOB 3.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1778 - - lja:Lj2g3v0934070.1 291.967