Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1776 ATGGCGATTCCAAAGCACAGGTCCGTCTTCAGCCACATCGCTTCAAGGGAGCTCAACCCCCTCCAAGGTCGAAAACGACCTCACATGGATGCATTCAAATATGGTTACTACCTTTACGGAGGTATAGCCACACAACACTATGCAGAAGACACTATCCCTCTATCAATTAAGTTCGGCAAGACCTCAAAATACGGTCACATCTTCGCTTTATCTGATGAGGATGGATTCGTCAACTTGTTCGATACTCGCCGCAAATTCAACAGTTGGGACCATGAACTAAACGCAGAGAATTTAAGGATTTGTGATTGGGTTTCGCATCGTAATGCTGTTTTTGATGTCTGTTGGATTAAGGAGGATACACAGATTATTACAGCTTCTGGTGATCAAACTATGAAGGTATGGGATGTTCAAGCGAAGAAGTGTCTTGGAGTGTTGGCGGGACACACTGGAAGTGTGAAATCTGTGTCTTCTCATCCAACTAATTCTGATATTATTGTCTCTGGTTCAAGAGACGGATCCTTTCGTCTTTGGGACTTAAGGTGCAACTCAATTTCTAAGACTGGAAGTGGGGAAGCGAGCATAAGTTCAACGGCTGTTGTCGAAGGTGCACATCTTTCATCTCAATCAAAACGAGTAACAAGGCGCAAGGCTGCCTCAATGAGTATTACATCTGTTCTTTATCTCAAGGATCAAGTTTCCATAGCCACTGCTGGGGCGGTGGAGAGTGTGCTGAAGTTTTGGGATACTAGAAATTTGAAAAGTATTGTCACACAGACATGTCCTCATCCTCAGTCAACAGAAAAGCAAGTACATGGTATAACTAGCTTGTCTCAAGATGACAGTGGACTTTTTCTTACAGCCTCTTGCATGGATAACCGAGTTTATCTGTATAATACCCTTCAACTTGAAAAGGGGCATTTTAAATCTTTTTCTGGATGTCAAATAGAGTCTTTTTTTGTAAAGGCTGCAATTAGTCCTGATGCATCGCACATAGTCTGTGGTTCTACTAATGGAAGACCCTGTGTTTGGCGGGTTAACAAGCCTCAAGACTATAGTATTTTGAAGAGTCATTATGAGGAAGTTACAGCGGTTGACTGGTGCTCCTCTGACATAAACAAGTTTGCAACAGCTTCTGATGATCCTTCAGTTCATGTATGGAGACAATCCAGTAGTATCCGCACAAAAGAGACTCCACTTCCCCTCCGAAGAAGGATAATTAATATGCCTAGTTGCCACTACACACTGGTTTCAGATAATGAAGAAACACGCCGCAAGCAAGATGCCGAGGCTTTTTTATACAGAGAAGAAGAACCTCACCATCAAACTGAGCCAGCCACTCCAATCACACCACCTAAAATGAACACATCTGAAGGCCACAAGAACCAGCTCTCATCAGGATTGGATCAAACTCTTGACTCTGAGAAAACTCCAGAGTCTGCCTTGAAGAGCCCTTCATCTGTATTGAACCCGCCATCCTCCCTAAAAAGAACTATCCGGGACTACTTCTTAGCATCTTCATGA 1521 0.4326 MAIPKHRSVFSHIASRELNPLQGRKRPHMDAFKYGYYLYGGIATQHYAEDTIPLSIKFGKTSKYGHIFALSDEDGFVNLFDTRRKFNSWDHELNAENLRICDWVSHRNAVFDVCWIKEDTQIITASGDQTMKVWDVQAKKCLGVLAGHTGSVKSVSSHPTNSDIIVSGSRDGSFRLWDLRCNSISKTGSGEASISSTAVVEGAHLSSQSKRVTRRKAASMSITSVLYLKDQVSIATAGAVESVLKFWDTRNLKSIVTQTCPHPQSTEKQVHGITSLSQDDSGLFLTASCMDNRVYLYNTLQLEKGHFKSFSGCQIESFFVKAAISPDASHIVCGSTNGRPCVWRVNKPQDYSILKSHYEEVTAVDWCSSDINKFATASDDPSVHVWRQSSSIRTKETPLPLRRRIINMPSCHYTLVSDNEETRRKQDAEAFLYREEEPHHQTEPATPITPPKMNTSEGHKNQLSSGLDQTLDSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASS* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1776 506 MobiDBLite consensus disorder prediction 447 493 - -
Lja2g1776 506 ProSitePatterns Trp-Asp (WD) repeats signature. 122 136 IPR019775 -
Lja2g1776 506 SUPERFAMILY WD40 repeat-like 62 399 IPR036322 GO:0005515
Lja2g1776 506 Pfam WD domain, G-beta repeat 99 135 IPR001680 GO:0005515
Lja2g1776 506 Pfam WD domain, G-beta repeat 353 386 IPR001680 GO:0005515
Lja2g1776 506 Pfam WD domain, G-beta repeat 140 178 IPR001680 GO:0005515
Lja2g1776 506 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 504 - -
Lja2g1776 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 187 IPR001680 GO:0005515
Lja2g1776 506 PANTHER BNAA06G31940D PROTEIN 5 504 - -
Lja2g1776 506 SMART WD40_4 253 298 IPR001680 GO:0005515
Lja2g1776 506 SMART WD40_4 311 344 IPR001680 GO:0005515
Lja2g1776 506 SMART WD40_4 208 248 IPR001680 GO:0005515
Lja2g1776 506 SMART WD40_4 347 387 IPR001680 GO:0005515
Lja2g1776 506 SMART WD40_4 96 135 IPR001680 GO:0005515
Lja2g1776 506 SMART WD40_4 138 178 IPR001680 GO:0005515
Lja2g1776 506 Gene3D - 313 443 IPR015943 GO:0005515
Lja2g1776 506 Gene3D - 44 184 IPR015943 GO:0005515
Lja2g1776 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 144 IPR001680 GO:0005515
Lja2g1776 506 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Lja2g1776 506 PRINTS G protein beta WD-40 repeat signature 122 136 IPR020472 -
Lja2g1776 506 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Lja2g1776 506 MobiDBLite consensus disorder prediction 434 506 - -
Lja2g1776 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 180 - -
Lja2g1776 506 Gene3D - 195 312 IPR015943 GO:0005515
Lja2g1776 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 103 137 - -
Lja2g1776 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 396 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1776 Lja-Chr2 18114244 18119363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1776 106 310 U-box Gene Family AT2G33340 25.962 2.37e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1776 K11790 - gmx:100819114 637.876