Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1762 ATGTTTTCATCACCAACCTCCGTTCTCATCCCACCACCACACAACAACCCCTTGTTGAACCACGCCAACACTTTCCACCATATTCAAGACAATACCCACAACCCTGACCTTTTGATGGAGGGTCTTTCGTTTGTTTCCAACCCTATCAATGTTCCCTCAATTCCCTACTTGGGTGAGTCTTCCCAAGCAGGGTCTCAAAGTGGTTTTGTCAACCCTAACCCTATGATACCTTCACCAAACAACAAAATGGAATCCTTGTACCACCACCAAGGTGGCACATTAATTTGGGATTTTAAACAAAAAACTACAATTCAATCATCTGCAGTTTCTGCTTCCTCCATTGCTCAAATGGGTCCCTTAATTGTGTCACAACCACCACCACCAGTAGATTCTAGTGAAATTGAATTGGTGAAGAGGGCTTTGTTTGAAGGGGATCTTTCATACCTCACTGAAATTTTTGGCACTAGTCATGATGGTGAGCAAAGGAAAAATGTGCAAGCTGAAGGGGATATCAACACTGCTAACATAACCAAAGGGCATTGGTCAAAACAAGAGGACATGGCTCTTGTGACATTGGTGAAGCAGTACGGACAGAGTAAATGGAGTAAAGTCGCAAAATTAATGAAGAAAAGGCTTGGAAGGCAGTGCAGAGAAAGATGGCACAACCATCTCAGGCCAGAGATTAAGAAGCGTCCATGGACAATGATAGAAGACCTTATACTGATCAAATCCCACCAAGAACTCGGAAACAAATGGGAAGAAATTGCAAAGAGATTGCCTGGTAGGTCAGGGAACACCATCATGAACCATTGGAACGCCACCAAGAAATGCCGAAATATTTTCAAGAAGCCTGAAACTTATGACGGATCTATGCTTCAAGCTTACATCAAAAGGGTCACTGCTTCTAAAGAATCTACAAGAGAAACGAAGAAGAAACCCATAAACAAGATGAAGATGAAGGAGGCCATGCATACAAAGTTGAATGAAGGTGTGGTCAATGGGAATGTCGATGGAATAGCAAGTGGGTCGGTGATGGATGGTGGAATAGTCAATGGTTCCACCATATATGGTTACATTCTTGAAGGCTTGATCTAG 1095 0.4283 MFSSPTSVLIPPPHNNPLLNHANTFHHIQDNTHNPDLLMEGLSFVSNPINVPSIPYLGESSQAGSQSGFVNPNPMIPSPNNKMESLYHHQGGTLIWDFKQKTTIQSSAVSASSIAQMGPLIVSQPPPPVDSSEIELVKRALFEGDLSYLTEIFGTSHDGEQRKNVQAEGDINTANITKGHWSKQEDMALVTLVKQYGQSKWSKVAKLMKKRLGRQCRERWHNHLRPEIKKRPWTMIEDLILIKSHQELGNKWEEIAKRLPGRSGNTIMNHWNATKKCRNIFKKPETYDGSMLQAYIKRVTASKESTRETKKKPINKMKMKEAMHTKLNEGVVNGNVDGIASGSVMDGGIVNGSTIYGYILEGLI* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1762 364 PANTHER MYB PROTEIN-RELATED 157 321 - -
Lja2g1762 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 228 IPR017930 -
Lja2g1762 364 Pfam Myb-like DNA-binding domain 181 235 - -
Lja2g1762 364 PANTHER MYB DOMAIN PROTEIN 100-RELATED 157 321 - -
Lja2g1762 364 SMART sant 177 226 IPR001005 -
Lja2g1762 364 SMART sant 229 277 IPR001005 -
Lja2g1762 364 SUPERFAMILY Homeodomain-like 175 271 IPR009057 -
Lja2g1762 364 CDD SANT 232 275 IPR001005 -
Lja2g1762 364 Gene3D - 177 229 - -
Lja2g1762 364 ProSiteProfiles Myb-like domain profile. 173 224 IPR001005 -
Lja2g1762 364 Gene3D - 232 290 - -
Lja2g1762 364 CDD SANT 181 224 IPR001005 -
Lja2g1762 364 ProSiteProfiles Myb-like domain profile. 225 275 IPR001005 -
Lja2g1762 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 280 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1762 Lja-Chr2 17922950 17925509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1762 174 318 MYB Transcription Factor Family AT4G18770 48.408 5.41e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1762 Myb_DNA-bind_6 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1762 K09422 - lja:Lj2g3v0949390.1 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1762 2 17922950 17925509 Lja2g1762 2 17922950 17925509 ECH
Lja1g1904 1 21783633 21787321 Lja2g1762 2 17922950 17925509 ECH