Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1761 ATGGCCGCCACAGCTACTGCCACAGTGGGTCCGCGATATGCACCACCCGACCCGACTCTACCTAAACCATGGAGGGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAACCCTGAGACTAATGTTACCCAGTATGAGAGGCCTACAAGCTCCGCTGCCCCGCCAAAGTCTTCGGTGCCCAGTTCTTCTGTCCAGGTTCAACAATCATCTCAGCGTGCTCGCAGTCCGGATTTGAAGGACAGGTATGATAGAAATGGAGGTGGTGGGTCAAATGACAGTGGATCACGGAACCATCAGAGTTCCAAAGAGGGAAGTTTTAGTTCTCATCCAAATGGAACACATGCTACTGGAAATGTTAGTTCTGTCAAAGATCAAGGGGCATCAGATGCTGGAGCTGGACTAAGCCCAGAGTCTTATCGGCGTCGGCATGAAATAACTGTTTCTGGAGATAATGTGCCGCCACCTTTTACATCATTTGGGTCCACTGGCTTACCACCGGAAATTCTTAAAGAGGTACAAAATGCTGGGTTCTCAGCCCCTACTCCAATTCAGGCTCAGTCATGGCCCATTGCTCTTCAAAGCAGAGATATAGTTGCCATTGCAAAAACAGGTTCAGGGAAAACTTTGGGATATTTAATCCCAGCATTTTTTCACCTCAAGCGTACTGGCAATAACTCCAAAATGGGTCCAACTGTTTTGGTACTTTCACCAACTAGAGAGTTGGCAACGCAAATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCTAGAATTTCTTGTGTGTGTTTGTATGGAGGAGCACCAAAGGGTCCTCAGTTGAGAGATATTGAACGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATAAGTCTTCATCAAATCTCTTACCTTGTGCTAGATGAGGCAGACAGAATGCTTGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCTGCACGCAGGCAAACTCTCATGTATACTGCGACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTTAACATCGGAAATGTAGATGAGCTTGTTGCCAACAAATCCATTACCCAGCATATTGAAGTATTGCCACCAACAGACAAACACCGTCGACTGGAGCAGATTTTGCGGTCTCAGGATCAAGGATCCAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACGCGCCAGTTTGGAGCTGCTGCTATACACGGGGACAAATCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTTCGAACTGGGAGGTCTCCGGTGCTTGTAGCCACTGATGTTGCAGCTCGAGGACTAGACATTAAAGACATTAGGGTGGTTGTCAACTATGACTTTCCTACTGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTTTAGCTTACACTTTCTTTGCGGAGCAGGATGCTAAATATGCTTCAGATTTGATCAAAGTCTTGGAAGGTGCAAACCAGCGTGTCCCGTCAGAACTTCGTGATATGTCAACACGGGGTGGTGGGATGAACAGATCCAGACGCTGGGGTTCAGGTGGACGGGGTGACTCTGGATATGGCGCAAGGAATGACTCTGGATATGGTGGAAGAGGTAGTGATTCTGGATATGGTGGAAGAGGTGGGTTTGGGACTGCTGCTTCTGGCAGGGGTGGAGGCCGTGGATTTGACAATGATTCACAAAGGAATGATCGTGGTCGAAGTCCTGAGAGGGGTGGTTCTAGCTGGAGTGATCGCTTCAAAAGTGGTGACCGCGATCGTAGTCGTAGTCCTGACAGGGCTGCACCATCTCAAAATACTCAATTCAGCTTTCACCAAGCAATGATGGAACGACGTGGAGGGGATAGTGATCGTAGTAAGAGCCTTAACCGTGACCGTAGTCGCAGTCCTGGTCCTCATAAACAGGAGAGGGCCCCAGCAGTTCGTGAAGGTTACAGTTTTCATGGATCAATGATGGGACAAGGGCAGCGTGATGACAGTCGTAAATCTGCACGTAGTCCTCACCGAAGTTCACCATCCTCCCCTGGTGGTGGTAGGTCTAACAATAACCCTCAGAAAGGGTGGGGAGGATCTCATCCTTCTTACAATGGAGAAGTGGAGGAAGGGATGATTCCTGAAGAAGGAATGATATGTTAA 2253 0.4767 MAATATATVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTSSAAPPKSSVPSSSVQVQQSSQRARSPDLKDRYDRNGGGGSNDSGSRNHQSSKEGSFSSHPNGTHATGNVSSVKDQGASDAGAGLSPESYRRRHEITVSGDNVPPPFTSFGSTGLPPEILKEVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFFHLKRTGNNSKMGPTVLVLSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIERGADIVVATPGRLNDILEMRRISLHQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLPPTDKHRRLEQILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFAEQDAKYASDLIKVLEGANQRVPSELRDMSTRGGGMNRSRRWGSGGRGDSGYGARNDSGYGGRGSDSGYGGRGGFGTAASGRGGGRGFDNDSQRNDRGRSPERGGSSWSDRFKSGDRDRSRSPDRAAPSQNTQFSFHQAMMERRGGDSDRSKSLNRDRSRSPGPHKQERAPAVREGYSFHGSMMGQGQRDDSRKSARSPHRSSPSSPGGGRSNNNPQKGWGGSHPSYNGEVEEGMIPEEGMIC* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1761 750 MobiDBLite consensus disorder prediction 530 750 - -
Lja2g1761 750 Pfam DEAD/DEAH box helicase 183 353 IPR011545 GO:0003676|GO:0005524
Lja2g1761 750 MobiDBLite consensus disorder prediction 706 729 - -
Lja2g1761 750 Gene3D - 16 72 - -
Lja2g1761 750 SMART ww_5 19 52 IPR001202 GO:0005515
Lja2g1761 750 MobiDBLite consensus disorder prediction 47 140 - -
Lja2g1761 750 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Lja2g1761 750 SMART ultradead3 178 381 IPR014001 -
Lja2g1761 750 CDD WW 21 51 IPR001202 GO:0005515
Lja2g1761 750 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 310 318 IPR000629 -
Lja2g1761 750 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Lja2g1761 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 537 IPR001650 -
Lja2g1761 750 MobiDBLite consensus disorder prediction 1 26 - -
Lja2g1761 750 Gene3D - 137 368 IPR027417 -
Lja2g1761 750 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Lja2g1761 750 Pfam Helicase conserved C-terminal domain 389 498 IPR001650 -
Lja2g1761 750 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 97 620 - -
Lja2g1761 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 515 IPR027417 -
Lja2g1761 750 MobiDBLite consensus disorder prediction 90 127 - -
Lja2g1761 750 SUPERFAMILY WW domain 12 52 IPR036020 GO:0005515
Lja2g1761 750 MobiDBLite consensus disorder prediction 47 75 - -
Lja2g1761 750 SMART helicmild6 418 498 IPR001650 -
Lja2g1761 750 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 97 620 - -
Lja2g1761 750 MobiDBLite consensus disorder prediction 649 680 - -
Lja2g1761 750 MobiDBLite consensus disorder prediction 596 631 - -
Lja2g1761 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 364 IPR014001 -
Lja2g1761 750 CDD SF2_C_DEAD 378 507 - -
Lja2g1761 750 Gene3D - 369 540 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1761 Lja-Chr2 17894490 17899776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1761 157 536 Eukaryotic Initiation Factors Gene Family AT3G19760 33.071 2.49e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1761 K12823 - gmx:100816455 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1761 2 17894490 17899776 Lja2g1761 2 17894490 17899776 ECH