Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1756 ATGGACAAAAAACCGTGCAACTCATCTCATGATCCTGAAGTGAGAAAGGGGCCTTGGACCATTGAAGAAGACTTGATCCTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAACACCTTAGCTAAATCTGCTGGTCTTAAACGTACGGGAAAGAGTTGTAGACTCAGGTGGCTGAATTACCTTCGCCCTGATGTTAGAAGAGGGAATATTACACCTGAGGAACAGCTTCTAATCATGGAACTTCATGCAAAATGGGGAAACAGGTGGTCCAAAATTGCCAAACATCTTCCAGGGAGAACTGACAATGAGATAAAGAACTTCTGGAGGACAAGGATACAGAAGCACATTAAGCAAGCTGAGAGCTTGCAACAACAACAGAGTTCTTCAGAGATAAATGATCATCACCAAACAAGCACTAGCCAGATGTCTACCATGGCAGAGCCCATGGATACCTACTCTCCACACTCCTCATCATACCACCACCACCAAGGAACTTTAAATTTGGAGCCATCATCATTTCCATTATCTCATCAATTCCCAACAACAATCACTACTCATGATCATCCATCAAGTTGTTGTACCAATGACAACAATAGCAACAACAACAGCAACATTAACTTCTGGAGCATGGAGGATATCTGGTCCATGCAACTACTGAATGGTGATTAA 675 0.4237 MDKKPCNSSHDPEVRKGPWTIEEDLILINYIANHGEGVWNTLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAESLQQQQSSSEINDHHQTSTSQMSTMAEPMDTYSPHSSSYHHHQGTLNLEPSSFPLSHQFPTTITTHDHPSSCCTNDNNSNNNSNINFWSMEDIWSMQLLNGD* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1756 224 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lja2g1756 224 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lja2g1756 224 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Lja2g1756 224 Coils Coil 107 127 - -
Lja2g1756 224 CDD SANT 73 112 IPR001005 -
Lja2g1756 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lja2g1756 224 SMART sant 15 65 IPR001005 -
Lja2g1756 224 SMART sant 68 116 IPR001005 -
Lja2g1756 224 Gene3D - 73 145 - -
Lja2g1756 224 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lja2g1756 224 CDD SANT 18 63 IPR001005 -
Lja2g1756 224 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 221 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja2g1756 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lja2g1756 224 MobiDBLite consensus disorder prediction 119 173 - -
Lja2g1756 224 Gene3D - 16 68 - -
Lja2g1756 224 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lja2g1756 224 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1756 Lja-Chr2 17783524 17787378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1756 14 224 MYB Transcription Factor Family AT3G01530 53.302 1.15e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g1756 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1756 K09422 - gmx:778046 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1756 2 17783524 17787378 Lja2g1756 2 17783524 17787378 ECH