Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1723 ATGATCATGGAACTTCCCGATTCCACCGGCGGCGACCGCAACAACAACCCGCCGCCGCCGCCGTTGCCGCTGCACCACCACCACGACGACGACTCTCGCTCCGGCCTCGGAATCGACCTCAACGAGATCCCTTCGCCTTCTTTCTCCTTCGCCGAAACCCTACCGGACTCCGCCGTGGATATCGTCCGCGCGTACCATGAGAACCCTGCTCCTCCGCCTGGTGACCCTGTTGCCCTCCCTCGCGGCTCCATTCCCTGCGCCTCATGCGGTGGGGTAGGTGGGGGTCAGCTCCTTGTGTGTGATGGCTGCGAGCGTGGATTTCACTTGGCGTGCGCCGGGATTCGCGGTGGCAGCTGCCGTCAGGCGGCTGGCCTCGGCGAGTGGGTGTGTGGGGAGTGTGTTTCGGGTGGGGTGAAGAGTAAGCGGTGGCCTCTAGGGGTTAAGTCTAAGCAGCTTCTCGATATCAACGCTTCGCCGCCCAGTGATGCTGACGGCGAGGACTTGCATGATTTGAGAAAGCACAACCTGGGAGATAAATCTTTTGGTGCCCCAGTTACATATTCAAACTTCCACAACGGGAGTGCTTTTGGCTTCCAAAGGGCTTCTGGAGTTGTGACACATGCTGTTAAAGTGGGTTTTGAGGATATATTGAATCATACCCAATCAATGACTAGAAATTTTGAGGAGGTATATGTGGATTTCCCTCTTGGAACTCATGGTAGTAGTAGTAATACAGCTACTAGAATACCATCTCGGAGTCCAAATGAAGTATTTTTGCAGGCTCTTAGAGATTTTATATCTGAAAGACATGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAATGAACAGCTCTGAACTATATGCAGTTTACTGTGCTCCTGATGGGAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGGCTAACGTCTGGTTACAATTCTTTGGAATCTGATGTAAGAAATCAAAGGTCTCTCCCTTCTTTAGGTGGTGGGCCCCACCTATCCAGAAAAAGGAAGCCAGTTAGGACTCTGGTAGCCAATGGTTTTGCAGAAAAAACGGGAACCTTGTCCAATAGTAATTGTAAGGATCCTCCTGCTGATGGTAGTGTGGAATGTGCTACTGCCAGGGAAAAAGTCCCAAAAGCCACTGGAATTGGGAAAGAGGATTGTCATGCTGGCCTTCCGCAATCTTCTGATGGACTTCCTCTGCAGTTCAAGGACTTCTTTGTTCTTTCCTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAATCTTATCTTTCCTGTAGGTTATAAATCTTGTTGGCATGATAAGCTTACTGGCTCTCTTTTTACATGCGAGATTTTGGAGGGTGGTAATTCTGGACCTATATTTAAGATCAGAAGGCATTCCTGTTCAAATTTTCATGTTTCTGCTGGTTCAACAACCCTCTCAATATCAAGTCACTGTCAGTTTGTGAGTCAACCCAATGATGGTGAGAGAAAGAGAAGTGATAATATGGATTTAGATGGTGATGAAAGTATCCAGATGATGCTGTTAGATCCGTGTGCGCCAACAGAAAATGACATCTTAAGTTGTGTTGCGAGTTGCTCGAATGAAGTATGTGATTCCCGTGCATCAGATGTATTACAGCCTGTTTCTGGTTCAGTTCAAGATAATACTAGAAATTCATTAGTTGATAACATGGGGTTTATTGATGAAATTGGTGAAATTTTGGTGGAAGAGCGGTCATCATCCTCAGCATGGAGAGTTATGTCTCAGAAGCTAGTTAGTGCTTGCAAGGATATCTGCCAGAAGAAAGGAACTCTCAAATTCTTTTGTCAACATGTTGAAAATGAGCCATGCTTACACAAATGGGATTTAAGGAATGGAAAAAGTGATACACACTTTACATCATTGGATAAATTTTGCTGTACACTTAGTTCGGCCAACATCCCAGATGTAATTTATGCAGACCATGATTTGAAAGATCTCTATGAGATGTTAGGAAGATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAATTGCTTCCGGGTGTCCAGGATTGTTTGCAGTATGAACTTCTGAATAGTAGAAGTAATAGCTCTTCATTGCCAACAGTAGAGAATGGTTTCCTTGTTGTCGAATGGAGAGGTGAATCAAAATATCAGGAAGAAGCACTTCAAGGATTATACAGGAGATCCAAGAAGCTTACATTGACTGAAAAATGTGAACATCGATGTCCACCTGCTGGGAAGCCACTATGCTCTAGGGCTCCTAGTGAGCTCATTGGTGACATTTTCCAGGTTTGGGAGCTTTTAGGGCGATTTCATGAAATTCTGGACCTGAAAGAACCATCATCATTAGATGAGCTTGAGAAGGAACTTATCAACCCATGGTTCAATGGATCGGATTTTCATGAGGAATATGAGAAGGAAATGGACGGCAGTCAAGTTTTATTTTCACAAGGAGCTAATGGTAATTGCAGACCATCATCATCCACAGAAAGTTCCCGTGCTTTTATTCAAGTGGAAACAGAAGCAATGAAAGAAGCAGCTCAAGTTAAACTCGCATCTTTCACTTATGCCAGATGCTTTGGTGTAGCTTTGACCAAGGCTCATAATTCAGTACTGAGAGTGCTAATAGGTGAACTTCTATCGAAGGTGGCTGCCCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGGACAAGGCGGGGAAGAAGGAAAGATATAGATAGTGCAGTTCCTACTAAACGAACCAAGGTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGTAGGTATATATTGGTTTTCTTGTCAATGGATGGTAACCTCGAGTCCGCAGAAATTACTGCTCGTGAAAGTGGTAAAGTATTTCGTTGCTTACGAGGTGATGGAGGTTTGCTGTGTGGTTCCCTAACTGGTGTGGCTGGGATGGAAGCAGATGCACTGTTGCTTGCAGAGGCTACAAAGAAAATATTTGGTTCTTTGACGAGAGAAAATGACGTCTTAACCATGGAAGAGGAAGAGTCTGATGCAAAGGATGCTTCTGAACAGAATTTGGCAAATGATGGTATTCCTGAATGGGCAGAATTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACACGAATCAGGAAGTGTGTTTATGATGCTCTAAGTAAGGATCCACCAGAGTGGGCTAGGAAAATACTGGAGCATTCAATTAGTAAGGAAGTGTACAAGGGCAACGCATCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGAATGACGTAGTTGGTGAAGGCTTGCTATCAAACCCCAATAAAGGAAGGAAAAAGAAGATAGCTATATCTATTTCTGACATCATCACCAAACAATGTCGCATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTCTGTAATTTGCTGGGAAGAAAATTAATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCTATGGTGGCCCGTCCTCTTGATTTCCGGACTATTGACCTAAGATTGGCTTCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTACGTGAGCTGTGGAAAAATGTTCGTGTTGCTTTTGGGGATCAACCGGAGTTAGTTGAACTGGCTGAAAAGTTATCCCAGAACTTTGAATCGTTATATAATGAGGAGGTTGTCGCCTATGTCCAAAAATTTGTGGACTATGCTAAATTGGAATGCTTAAATGCAGAGATGAAAAAAGAAGTTGACGGTTTTATTGCGTCAATAAGTGAGATTCCGAAAGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGTCTTGATAAGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAGCATGCAACTCAAAATGTTATAGAACACTCGCAGATTATTGGCAAACGTCGTAGTAAAAAATTCCTGGGAGAAGTTAATCGTCTTAACTTGGAAGCTCTAACTCATTTGTCAACTGTGGTTGAAGAAAAAGAATACTGGGAGTACAGCGTGGCCGAGAGAACTTTCCTCCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGATACGCCAGCACCTTGAGCAATGTGCTGACTTGTCTGTTGAGTTACATCAGAAATTGCGTGCACTATCTGTTGAGTGGAAAAACCTGAAAACTAAAGAGGACATTTTATCCACAAAAGCTGCAAAACTTGATACATTCTCTCTAAATACTGCTGGAGAAGTTGGTCTTAAAGAAGGATTACAAGCTTTGTTCTCAAATTCTGGTAAATGTCTGGGGCAGCCGCATACTGCAGCTGACAATCCTAGTAGCTTTGGGGTATTTGTTGATAGTTTGCCTTCAGAAGAGATTACCAAAGAGAAGTATAGGTTCCATAGTGTTGATAAAAGTGTATCTATGACAAATTCAGATTCTGATAGCCAAAATATGAATTCCATAGATGGAGAGGTACAAAGGAATGTTTCTGTGGCTGTGGAGTCCCAATGTACTGATAAATCCCCCAAGTCTTGTTCATCACCAAATCATATGTCACATGACATAAATGGTTCTGGTGGAGCAGCTCATATCCCGGATAACTACCAGAAATGTGAGGGAAGGGATGTATCTACTCTTGTGGCATACCAGCAAGGACAATGTGTGCCTGTTGAAGTTCCTCAGAGTGCTATGAATGAGTCAGAAACCTGCCACCTTGAGCTCAATGCCATCAAGCGTGATGTTTCTCTGGTGCAGGATTCCATAACTAGTGTAGTATCACAGCTGCTGAAGCTCTCTTTCCGTAGGGAATTTTTGGGTATCGACTCCATTGGTCGACTGTACTGGGCTTTGCCTACACCGAGGGGACATTCACGTATAGTTGTTGATGCAAGTGCTGTAGTGCTGCATGGAAAAGGAATGACAGTTAGTCAGAACTCAGTGGAAAAGTTTTCTGTTCTGCAGCATTGTGCACAATCTAACAAAGATAACTACAAGATTTTAGGGGTGATCAAGGACTCGTCTCCTTTAATGTCTCAACCAAGTACTGCTTTGGTCAGTAGTTCACCATGGATTGCTTATGAAACTGATGCAGAAATCGAAGAGCTCCTTGGTTGGCTAAATGATAATGACCCTAAAGAAAGAGAACTGAAAGTTTCCATTATGGCAGGGCCAAAATCAAGATATCAACAGTTTCTTAATGCACAGACTGAATGTCAGGTTTCGGACCAAGGACCTATTTCTATTCCGAAAAAGGGAGAGAAAACAGTATCTAATTCTCTTGTCACAAAGGCCACTTCCTTGCTGGAAAAGAAATACGGTCCCTTCTTTGAGTGGGATTCAGTTGAGGTGTTGAAGAAGCCGAGTAAAAAGGCTAGAACAACTAATGATGAAAAGTTGTATAGGTGTGAGTGCCTAGAACCTGCATGGCCTTCTAGGAAACACTGCATGTATTGCCACAAAACTGTTTCGAGTGATGTTGAATTTGAGGATCACAATGATGGCAAATGTAATGCGGGCCATCTGGCTTTGGAGAAGACTAAGGATAAAAAAGTATTTTCCAAAGGAAGAGGGAACTTAAAATCGGATGCACCGCATGAAAAATTCAGAGCAGATGCAGAAGCAAGCAGAACTTCAATTAGTGGGTGTTCCAACCTGAGCTCAAGATTGATTAAATTTTCAAACGAAGAATCCACATGCCCATTTAACTTTGAAGATATATGTATGAAGTTTGTGACAAACGACTCCAACAAGGAACTTGTCAGAGAAATAGGTTTTATTGGTTCAGATGGCATCCCATCCATTGTTCCATCCATATCTCCTTTTGTTAGTGACTATACACTATTCTCAGCTCAAAAGAATGACATGGATGGTGGTGGTGCATCTAAAGCTTCAGAAAGCCGGATTTCTCAGATAAACACTGATGTAGCTGGCATATGTCATGATCATCAATCAGGCGAATCTACTGAAAGGTTAGCTGCAAATGAAACCAGTAATGCAGGAAAGTCATCCTTGGGAGAACAAAGAGATGGAAAGATTTCTTTTTGTAGTCCGGCTTCAGATATGGTAGTCGATGGCTGTTGTGTGGTCCCTTCGTCTTCCTTGAGACCATTAGTTGGAAAAGTTTCTCATATTTTGAGGCAATTGAAGATTAATCTACTTGATATGGATGCTGCACTCCCCAAGGTTGCTTTAAGACCATCAAAGGCACAGTCGGACAGAAGACAGGCCTGGCGTTCATTTGTTAAATCTGCAAAGACTATATATGAGATGGTTCAGGCAACAATTACACTAGAGGATATGATTAAGACAGAGTACTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCGGCCAAATCTTCTACTTTGCCTTCCCTTGCGCTCCGCATATACTCCCTTGATTCAGCCATTATATATGAGAAAGTGCCCTATTCAAGTTTTACTGACAGCTCTGAACCTCCTACCATAGCAGAACAGAAATCACTGGTGGCTGTGGATCCAGAGAAATCCAAAGCAAGCCGGAAGTCGAACAGGAAAAGAAGGGAACCGGGTGGTTGA 6696 0.4312 MIMELPDSTGGDRNNNPPPPPLPLHHHHDDDSRSGLGIDLNEIPSPSFSFAETLPDSAVDIVRAYHENPAPPPGDPVALPRGSIPCASCGGVGGGQLLVCDGCERGFHLACAGIRGGSCRQAAGLGEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGEDLHDLRKHNLGDKSFGAPVTYSNFHNGSAFGFQRASGVVTHAVKVGFEDILNHTQSMTRNFEEVYVDFPLGTHGSSSNTATRIPSRSPNEVFLQALRDFISERHGVLEEGWRVEFRQSMNSSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSLESDVRNQRSLPSLGGGPHLSRKRKPVRTLVANGFAEKTGTLSNSNCKDPPADGSVECATAREKVPKATGIGKEDCHAGLPQSSDGLPLQFKDFFVLSLGKVDGRPSYYDVNLIFPVGYKSCWHDKLTGSLFTCEILEGGNSGPIFKIRRHSCSNFHVSAGSTTLSISSHCQFVSQPNDGERKRSDNMDLDGDESIQMMLLDPCAPTENDILSCVASCSNEVCDSRASDVLQPVSGSVQDNTRNSLVDNMGFIDEIGEILVEERSSSSAWRVMSQKLVSACKDICQKKGTLKFFCQHVENEPCLHKWDLRNGKSDTHFTSLDKFCCTLSSANIPDVIYADHDLKDLYEMLGRWLEQDRFGLDVEFVQEVLELLPGVQDCLQYELLNSRSNSSSLPTVENGFLVVEWRGESKYQEEALQGLYRRSKKLTLTEKCEHRCPPAGKPLCSRAPSELIGDIFQVWELLGRFHEILDLKEPSSLDELEKELINPWFNGSDFHEEYEKEMDGSQVLFSQGANGNCRPSSSTESSRAFIQVETEAMKEAAQVKLASFTYARCFGVALTKAHNSVLRVLIGELLSKVAALVDPNSEPGETRTRRGRRKDIDSAVPTKRTKVNMLPINELTWPELARRYILVFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLTRENDVLTMEEEESDAKDASEQNLANDGIPEWAELLEPVRKLPTNVGTRIRKCVYDALSKDPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLNDVVGEGLLSNPNKGRKKKIAISISDIITKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDVRELWKNVRVAFGDQPELVELAEKLSQNFESLYNEEVVAYVQKFVDYAKLECLNAEMKKEVDGFIASISEIPKAPWDEGVCKVCGLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQNVIEHSQIIGKRRSKKFLGEVNRLNLEALTHLSTVVEEKEYWEYSVAERTFLLKFLCDELLNSSLIRQHLEQCADLSVELHQKLRALSVEWKNLKTKEDILSTKAAKLDTFSLNTAGEVGLKEGLQALFSNSGKCLGQPHTAADNPSSFGVFVDSLPSEEITKEKYRFHSVDKSVSMTNSDSDSQNMNSIDGEVQRNVSVAVESQCTDKSPKSCSSPNHMSHDINGSGGAAHIPDNYQKCEGRDVSTLVAYQQGQCVPVEVPQSAMNESETCHLELNAIKRDVSLVQDSITSVVSQLLKLSFRREFLGIDSIGRLYWALPTPRGHSRIVVDASAVVLHGKGMTVSQNSVEKFSVLQHCAQSNKDNYKILGVIKDSSPLMSQPSTALVSSSPWIAYETDAEIEELLGWLNDNDPKERELKVSIMAGPKSRYQQFLNAQTECQVSDQGPISIPKKGEKTVSNSLVTKATSLLEKKYGPFFEWDSVEVLKKPSKKARTTNDEKLYRCECLEPAWPSRKHCMYCHKTVSSDVEFEDHNDGKCNAGHLALEKTKDKKVFSKGRGNLKSDAPHEKFRADAEASRTSISGCSNLSSRLIKFSNEESTCPFNFEDICMKFVTNDSNKELVREIGFIGSDGIPSIVPSISPFVSDYTLFSAQKNDMDGGGASKASESRISQINTDVAGICHDHQSGESTERLAANETSNAGKSSLGEQRDGKISFCSPASDMVVDGCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPKVALRPSKAQSDRRQAWRSFVKSAKTIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIIYEKVPYSSFTDSSEPPTIAEQKSLVAVDPEKSKASRKSNRKRREPGG* 2232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1723 2231 MobiDBLite consensus disorder prediction 2033 2048 - -
Lja2g1723 2231 SMART PHD_3 85 134 IPR001965 -
Lja2g1723 2231 SMART PHD_3 1289 1335 IPR001965 -
Lja2g1723 2231 CDD Bromodomain 1135 1242 - -
Lja2g1723 2231 Pfam PHD-finger 1289 1335 IPR019787 -
Lja2g1723 2231 Pfam PHD-finger 86 134 IPR019787 -
Lja2g1723 2231 MobiDBLite consensus disorder prediction 1 38 - -
Lja2g1723 2231 ProSiteProfiles Bromodomain profile. 1180 1228 IPR001487 GO:0005515
Lja2g1723 2231 SUPERFAMILY Bromodomain 1125 1244 IPR036427 GO:0005515
Lja2g1723 2231 Pfam Bromodomain 1178 1233 IPR001487 GO:0005515
Lja2g1723 2231 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1369 1413 IPR028942 -
Lja2g1723 2231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 142 IPR013083 -
Lja2g1723 2231 SUPERFAMILY DNA-binding domain 265 317 IPR016177 GO:0003677
Lja2g1723 2231 MobiDBLite consensus disorder prediction 2210 2231 - -
Lja2g1723 2231 CDD PHD1_Lid2p_like 1289 1334 - -
Lja2g1723 2231 Gene3D - 407 517 - -
Lja2g1723 2231 PANTHER OS02G0192300 PROTEIN 33 2230 - -
Lja2g1723 2231 ProSitePatterns Zinc finger PHD-type signature. 1290 1334 IPR019786 -
Lja2g1723 2231 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 263 330 IPR001739 GO:0003677
Lja2g1723 2231 SUPERFAMILY FYVE/PHD zinc finger 1275 1339 IPR011011 -
Lja2g1723 2231 CDD PHD_SF 86 133 - -
Lja2g1723 2231 ProSiteProfiles Zinc finger PHD-type profile. 1287 1337 IPR019787 -
Lja2g1723 2231 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 33 2230 - -
Lja2g1723 2231 Pfam Methyl-CpG binding domain 264 317 IPR001739 GO:0003677
Lja2g1723 2231 ProSiteProfiles Zinc finger PHD-type profile. 83 136 IPR019787 -
Lja2g1723 2231 MobiDBLite consensus disorder prediction 2192 2231 - -
Lja2g1723 2231 ProSitePatterns Zinc finger PHD-type signature. 86 133 IPR019786 -
Lja2g1723 2231 Gene3D - 1132 1252 IPR036427 GO:0005515
Lja2g1723 2231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1276 1356 IPR013083 -
Lja2g1723 2231 MobiDBLite consensus disorder prediction 2030 2051 - -
Lja2g1723 2231 ProSiteProfiles FYR domain FYRN motif profile. 406 459 IPR003888 GO:0005634
Lja2g1723 2231 SUPERFAMILY FYVE/PHD zinc finger 84 144 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1723 30 2231 C2H2 Transcription Factor Family AT3G01460 45.903 0.0 1780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja2g1723 Bromodomain 4.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1723 K22768 - gmx:100820223 3266.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1723 2 17256024 17272244 Lja2g1723 2 17256024 17272244 ECH