Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1721 ATGTTTAGAAACTTTCTGAGCTTTTCAGCACTGGTGTTGACAATGGCAGTTATTATATCTTTGGTACTGATATTTGTGGGACTAGTGTTCCTGGTCCTGATTCATGTGTGTTTGTCTGAGTGGTTCTCAAGAACAGGAGGAGGCTCAGGAGGATCAATGACTGAGAGGGGTGCAAATGGGGGAAGAAGCATGTCCAAAAAGGACTTGGAGAAGCTTCCTTGCTATGATTATGTTGCCAAAGACAACAGCACATGTAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAATCTCACTACAGGAGATAAGTGCAGATTGTTGCCTGTTTGCAAGCACAGTTTTCATGCCCAGTGTGTGGATACTTGGCTTCTCAAGACACCCATCTGTCCAATTTGTAGATCCAGTGCTGGGTCTTCTCATAGTGGAAACCAAGTTCAAGTTGTGGAAAGTGGTTCATCAAGAAATGTTGCAATAGAAATGATGGACAATCCAATATTTGGAACCCCCAGGTCTGGTCAAGGAGAAGTGGAATCAAGAGTGCACCAAACAGGTACAGCTGAAAATCAATGA 567 0.4392 MFRNFLSFSALVLTMAVIISLVLIFVGLVFLVLIHVCLSEWFSRTGGGSGGSMTERGANGGRSMSKKDLEKLPCYDYVAKDNSTCSPVDCAVCLENLTTGDKCRLLPVCKHSFHAQCVDTWLLKTPICPICRSSAGSSHSGNQVQVVESGSSRNVAIEMMDNPIFGTPRSGQGEVESRVHQTGTAENQ* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1721 188 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 159 - -
Lja2g1721 188 SMART ring_2 90 131 IPR001841 -
Lja2g1721 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 136 IPR013083 -
Lja2g1721 188 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Lja2g1721 188 MobiDBLite consensus disorder prediction 174 188 - -
Lja2g1721 188 Pfam Ring finger domain 89 132 IPR001841 -
Lja2g1721 188 MobiDBLite consensus disorder prediction 164 188 - -
Lja2g1721 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 159 - -
Lja2g1721 188 SUPERFAMILY RING/U-box 83 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1721 Lja-Chr2 17237347 17238146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1721 69 166 C3H Transcription Factor Family AT2G18650 42.857 9.01e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1721 - K15692 lang:109353575 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1721 2 17237347 17238146 Lja2g1721 2 17237347 17238146 ECH