Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1714 ATGCAGATCATGGCTACTAGAATTCTTTCCTCTCTACATCATGTCTCTTCTTCTGCTTCAGCTGCTAAACGTTGTTTAGGTCTATATTGTCTCTGGCATAGAAGTATCAGTGGATTTGGTGCTTCTGCTGCTGTTGATGTAGATCCTAGTATACCACCTGTGCAAATAGATCATAGTCAGCTTCTGATTAATGGACAATTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACTTATGATCCTAGAACAGGTGATATAATTGCCAATGTTGCTGAAGGTGACAGAGAAGATGTAAATCGTGCTGTCCACGCAGCTCGGAAGGCTTTTGATGAGGGACCATGGCCTAAAATGACAGCTTATGAAAGATCGCGTGTAATGTTGCGCTTTGCTGATTTATTGGAAAAGCACAATGATGAAGTTGCAGCAATTGAAACTTGGGACAATGGGAAGACTTATGAACAGGCTGCAAATGTTGAAATACCTATGGTTGTACGGGTGTTTCGGTATTATGCAGGTTGGGCAGATAAAATTCATGGTCTAACAGTTCCAGGTGATGGACCGCACCATATCCAAACCTTGCATGAGCCCATTGGTGTAGCAGGGCAAATTGTTCCTTGGAATTTCCCACTTCTTATTTATTCATGGAAGGTTGCACCTGCATTAGCATGTGGTAACACAGTTGTGTTGAAAACTGCAGAACAAACACCTCTTTCTGCTCTTTATGTGTCAAAGCTATTTCTTGAGGCAGGACTTCCTCCAGGTGTTCTAAACATTATCTCTGGTTTTGGTCCTAGTGCTGGTGCAGCTCTATGTAGTCATATGGATGTTGACAAGCTTGCTTTCACAGGATCCACTAGCACTGGCAAGATTGTACTAGGACTGTCTGCACAAAGCAATCTGAAGCCAGTAACTCTGGAGTTGGGTGGAAAATCTCCTTTCATTGTGTGCAAGGATGCTGATGTTGATGCCGCGGTTGAGACGGCACACTCTGCCATATTCTTTAATCAGGGTCAATGTTGTTGTGCTGGTTCTCGCACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAGGCCCGTGCTCTTAAACGTGTAGTTGGAGACCCTTTCGAAAATGGAGTTGAGCAAGGTCCTCAGATTGATTCTGTGCAATTTGAGAAGATCCTGAATTACATTAGATCAGGAGTTGAAAGTGGTGCTACACTTGAATCTGGTGGTCAAAGAATTGGCTCCAAAGGCTACTACATCCAACCAACAGTTTTCTCAAATGTTCAGGACAACATGTCGATAGCAAAAGATGAGATCTTTGGTCCAGTACAATCTATACTAAAGTTCAAGGATCTAGAGGAGGTAATAAGAAGGGCCAATGCAACTTCCTATGGTCTGGCTGCGGGAGTTTTTACTAAGAATTTGGAATCTGCTAACACCTTGATGCACGCATTGCGAGTTGGAACAGTGTGGATCAACTGCTATGATGTCCTTGATGCAACAATTCCTTTTGGTGGATATAAGATGAGTGGGCAAGGTAGAGTAAAGGGAATGCACAGCCTTAGTAGCTACCTTCAAGTTAAAGCTGTTGTGACTGCTATGAAGAATCCAGCATGGTTGTAG 1620 0.4265 MQIMATRILSSLHHVSSSASAAKRCLGLYCLWHRSISGFGASAAVDVDPSIPPVQIDHSQLLINGQFVDAASGKTFPTYDPRTGDIIANVAEGDREDVNRAVHAARKAFDEGPWPKMTAYERSRVMLRFADLLEKHNDEVAAIETWDNGKTYEQAANVEIPMVVRVFRYYAGWADKIHGLTVPGDGPHHIQTLHEPIGVAGQIVPWNFPLLIYSWKVAPALACGNTVVLKTAEQTPLSALYVSKLFLEAGLPPGVLNIISGFGPSAGAALCSHMDVDKLAFTGSTSTGKIVLGLSAQSNLKPVTLELGGKSPFIVCKDADVDAAVETAHSAIFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRVVGDPFENGVEQGPQIDSVQFEKILNYIRSGVESGATLESGGQRIGSKGYYIQPTVFSNVQDNMSIAKDEIFGPVQSILKFKDLEEVIRRANATSYGLAAGVFTKNLESANTLMHALRVGTVWINCYDVLDATIPFGGYKMSGQGRVKGMHSLSSYLQVKAVVTAMKNPAWL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1714 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Lja2g1714 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 24 539 - -
Lja2g1714 539 Pfam Aldehyde dehydrogenase family 67 529 IPR015590 GO:0016491
Lja2g1714 539 SUPERFAMILY ALDH-like 57 532 IPR016161 GO:0016491
Lja2g1714 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 527 IPR016162 GO:0016491
Lja2g1714 539 CDD ALDH_F2BC 56 531 - -
Lja2g1714 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Lja2g1714 539 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 24 539 - -
Lja2g1714 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1714 Lja-Chr2 17195788 17199577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1714 4 539 Aldehyde Dehydrogenase Gene Family AT3G48000 72.305 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1714 K00128 - gmx:100798892 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1714 2 17195788 17199577 Lja2g1714 2 17195788 17199577 ECH