Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1709 ATGTATCCTATGTGGTTTTTTGGCCATACCCATTTGAAGATGGCTTGGGTTAAGCATCAAATCCAGCAGAGAGATGGTTACTTGAACTACCCTCCACCAGTTTTGTCTTCATCTTCTTCATCCCCATACCCTGGTTCTGTTTTCCATAAGGAACCAATGTCTTCTTCTTATTCAACACCACCACCTCCTTCATCATCTTCTGGTACTAGAATTAGTCCAGCTGTTCTTTTCATCATAGTGGTTTTGGCTGTTCTGTTTTTCATTTCTGGTCTGCTCCACCTGCTTGTTAGATTCCTCATAAAGCACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACAATGAAATATCCACCTCTGATGCTCTTCAGAGACAGCTGCAGCAGCTCTTCCACCTCCATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAGTTCAAGGAGATTGTGGGTATGAAAGAGCAATTTGACTGTGCTGTTTGCTTGTGTGAGTTTACTGAAAAGGATAAGCTCAGGTTGCTTCCTATGTGCAGCCATGCTTTTCATATCAGTTGTATTGATACCTGGCTTTTGTCAAACTCCACTTGCCCTCTTTGTAGAGGAACCCTCATTGCTCCAGGGTTTTCTATTGATAACCCCATGTTTGATTTTGATGATCTGAGGGAAGATGATGATGTGGGAAATAGATTCAGTTCTAGACAGAAAACAGTTGTTGTTGAAGAAACTGTAGAGAAAGAGAAAGAGAAAGGGGTTTTCCCTGTGAGGCTTGGTAAATTCAAAAAGGTGGATGTGGTGGAGGCTGGGGAGACTAATGGAGTTGGAGAAACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGATCTTACCAGTATGTGGTTGGCAATTCAGAACTCAGGGTAGCCTTGAACCATCCAAGACTTACCAAAGGAACAGAAAATGCAGAGAGGCTTTCAGTGGAGGGGGATATGGAGGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTATCTCCAAAATCTGGTTGTGGCCAAAGAAGGGAAATTTACATGGTTCTATGGAAGCTCAAGTGGGCATGTCATCTCATCTTAATACTAACTTGAGGGAGATGAGGAAAACAGAAGGGGTATGA 1161 0.4238 MYPMWFFGHTHLKMAWVKHQIQQRDGYLNYPPPVLSSSSSSPYPGSVFHKEPMSSSYSTPPPPSSSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGMKEQFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLIAPGFSIDNPMFDFDDLREDDDVGNRFSSRQKTVVVEETVEKEKEKGVFPVRLGKFKKVDVVEAGETNGVGETSSSNLDARRCYSMGSYQYVVGNSELRVALNHPRLTKGTENAERLSVEGDMEAKKISSVSKGDSFSISKIWLWPKKGNLHGSMEAQVGMSSHLNTNLREMRKTEGV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1709 386 Pfam Ring finger domain 162 205 IPR001841 -
Lja2g1709 386 CDD RING-H2_PA-TM-RING 162 205 - -
Lja2g1709 386 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Lja2g1709 386 SUPERFAMILY RING/U-box 142 210 - -
Lja2g1709 386 SMART ring_2 163 204 IPR001841 -
Lja2g1709 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
Lja2g1709 386 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 14 368 - -
Lja2g1709 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1709 Lja-Chr2 17144754 17146754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1709 65 362 C3H Transcription Factor Family AT2G18650 41.317 2.04e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1709 - - gmx:100806337 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1709 2 17144754 17146754 Lja2g1709 2 17144754 17146754 ECH
Lja1g1926 1 22036720 22042363 Lja2g1709 2 17144754 17146754 ECH