Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1704 ATGCATGGCTTCGGTCTTGAGGAGTGGAAACAGAGCCGGCACATGTGGCCTGTACCTTCCAACGCGCCCACTGTAGCTCCTGATTCTGAATTTATATGCAAAGATGGACGCAAGATTCGCGTTGGTGATTGTGCACTTTTCAAGCCACCCGAGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTGACTTTTGATAAAGAAGAACGTCCAAGTTTAGAAGTGAATTGGTTTTACCGACCTGCTGATTTGAAGCTAGCTAAAGGGATTGTCCTGGAAGCTGCACCGAACGAAGTCTTCTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTCAAGGTGTTGAACTTCCTTCAGGGTTATCCGCATTTGTGTGTAGACGAGTGTATGACATTGAGAACAATTGTTTATGGTGGCTAACTGATAAGGACCACATTAATGAACAGCAGGAAGAAGTTGAGCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGACTGTGCAATCAGGAGGCCGTTCTCCTAAACCTTTGAATGGTCCAACATCAACACAGCCATTGAAATCTGGTTCTGATAACGTTCAAAATAGTTCTTCCTTAGGTGTACAGGGTAAGGGAAAAAAGAGAGATCGTGGTGATCAGGGATCTGATTCATCTAAAAAGGAGCGGTTATTTAAAGTAGAAGATGGTGATTCTGGTCAATTTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATCACTGATAAAGGTGGACTTGTGGACTTTGAAGGAGTTGAAAGACTGGTACAACTCATGCAGCCTGATAGTACTGATAAAAAACTTGATTTAGCTGGGCGAATAATGCTTGTTGATGTAATAGCGCTTACGGACCGGTATGACTGTCTTGGCTGGTTTGTACAGCTCAGGGGTTTGCCCGTTTTGGATGAATGGCTGCAAGAGGTCCATAAGGGAAAAATTGGTGATGGTAATATGCCTAGAGAAAGTGACAAGTCTGTTGAAGAATTTTTGTTGGCTTTACTTCGTGCATTGGATAAACTTCCTGTGAACCTTCATGCACTACAAACATGTAATGTTGGGAAGTCTGTCAATCATTTACGCACCCACAAAAATTCTGAAATTCAGAGGAAAGCCAGGGGTTTAGTAGACACGTGGAAGAAACGTGTTGAAGCTGAAATGAATATGAATGATTCAAAACCTAGTTCAACCCGTACTGTTTCTTGGCCCGCAAAGCCAACAGCTTCTGAGGTTCCTCACCTTGGGAGTAGGAAAAGTGGGGGATTCTCTGAGAATATTGCAAAGAGCTCTGTTATTCAACCTTCAGTATCTAAAAATTCCCAAACAAAGCTTAGTTCTGGAGAAGCACTATCCAAGTCATCTCCTGGCTCAACGAAACCAATGACTACCTCAGGGGGCAGTAACCTGAAAGATCAAAACATCAAAGTCTTGGTTGGATCTGCAACTTCTGATCTACCTCTGACGCCTATCAAGGAGGAGAAGAGCAGTGGTTCCAGTCAATCTCAAAATAACAGCGTATCCTACTCTAGTGATGCAAAAGCTATCGGTTCTTGTAGGGAAGATGCAAAGAACTCCACTGCAGTGTCGATGAGTGTAAGCAAAATTCCTGGCAGTGCATCTCGAACTCGGAAGTCCAGTAATGGTCTACATGGGGCTGGTGTTGCTGTAGCTCAGAAGGAAAATAGCTCTGCTAAAAATTCTACCCGGAGCTCACCTTCTGAAAAGGTTTCACCAACTCAAGCATCCCATGAAAAATCACCTGATCGGTCCCTTACCGATCAAGGGAATAATCAGCGACTCATTCTCAGGTTACCAAACACTGGTCGCAGTCCTTCTAGGGGAGCTGGTGGAGGCTCTTTTGAAGAACCTGGTGTGATGTGGGGCAAAGCATCACCTCCGGCTGACAACAGAAAAATGAAAGCTAAAAGTGATTGTTTGCAAACCAATGTTGCACCAAATGTGATAAATGATGCATGTGATGGTAATGAAAAGGCTGGTGTTGATGAAGCCAAGGGTTCTCCAATGGTTGATGAGCGGTGCCGTGCTAATGAAGATGGTGATAAAGTGGCAGAGACGTCAAAACCCGCTAGTTCATCTGGATTTGTTTCCAGATCAAGGCAGACATATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCTGAAGCAAGTTCCTCTGTGTCTCCTGGAGATGAAGGGATGAATCTGCTTGCTACTGTAGCCGCAGGGGAAATTTCCAGATCTGAAAATGTCTCACCTGCAGTTTCACCTGAGAGGAAGTCTCCTGCAGCTGATGAATCGAGCTCAAGGAATGATTGCAAGTTAAAAGATTCTTTTGAAGCAGGTGCTCGCAACCTGGGACAGTCTGATGGTGCCGCTACTGGAGATGGTGAAGCCATTGCATCCAGTTGTATAGAGAAAACTAGTGAAGGCAGAACACAAATAAATTTCTCTACTACAGATTTGTTACAGAATGCTGAAGGTCCATGCTTACAGCCCGAAACGAAAGAAGACACTTCTGAAGCTATATTGCCAGCTAAAAAGGAGACTCATGCAGAACCTGGAGCAGCACATTTTCAGGAGCATAGGTCAAGGACTTCCTCTTTTGATGATGTTCAGAAGATCGATCACATGGATGAGGGAATCACAGAGAACGAGAAAATGCTGGTTTCAAAAGCTGTTGGAACTGTTAAGACTGAAAATGAACTCGGTAAAAAATCACCTGAGTTATCTTCAGTTGTACATAATGACAACCAGATTAGTGCAGAAAAAGTGATTGGTACCAGTTTATCAGTGCAAAAAGGCTCTCCAGTCACAGAAAACTGTGAGTCCGTAGATTTGAAAAAGGAGGATGTCACTTCACCTGCTTCTGGTAATGCTTTGACGGTATCCAGGGATGAAAAGGCTGATGACATGAAGCCATTGGAGATTCAGCCTGATGAAAAACAAACGGGTCTGGATTCCCTAGTTTCAGATGGTGTTAATGATTGTGCTGAAGAGAATTCGGGTAGAAAAGATGTTCTTGTTCAGTGTTCTGGCTCAGCTGTTCACTCAGATTTTCCAGCAATTCATGGGAAAGTGAAGGAATTGCCTAAGACATGCGAGTCTAACGTAGATGGAAATCAATCTGAGGTTGCAGGAGAGTGGCATGCACACAGTGCTAATCCATCCCCAACTGTTACTGGGTCGGATGCAGTAAAGCTGGACTTCGATTTAAATGAAGGCTTTCCTGCTGAAGATGTAGGCCAAGGGGAGATTGTTAGACAAGAAGAACCTAGCACATCATCTGCAGTACATGTTCCTTGTCCGTTGCCTTTTCCCATTTCATCTATTTCCGGGGGCTTCCATGCTTCAATTACAGTGGCATCTGCTGCCAAAGGTCCAGTTGTCCTACCAGAAAACCCATTGCGAAGTAAAGTGGAACTTGGATGGAAGGGGTCAGCTGCTACAAGTGCATTCCGTCCAGCTGAACCTAGGAAAAATGCGGAGATACCCTCAAATACTAGTGACGTTACATCTGTTGATGCCACTTCAGTCAAACCTTGTCGCCCTCCTTTAGATTTTGATTTAAATGTGGCAGATGAAAGAAGTTTTGAGGATGTAGCTTCACGTGGCTCTTTAGAATCTGGACCCCACGATCGTAGCACTGTAGGATTTGATCTTGATTTAAACAGAGTGGACGAGACTCCTGAAGCCGGGTCTTTCTCTATGAGCAAACTGGATATTCCTTTACCGAGTAAACCTTCGTTGTCCAGTGGGTTGTCCAATGGTGGAAGTGTCTCAAGAGACTTTGATTTAAATAATGGGCCTGGCCTTGATGAAGTTTGCAATGAGGTTCCAGCACGTAGTCAGCAGTTGAAAAGTGCTATACCGTTTTCTACAGCTGCTCATGGCCCGAGAACAAATAGTGTTGAATTTGGGAACTATTCATGGTTTCCTCAAGGCAATTCTTATTCTGCAATTACTGTCCCACCACTTCTGCCTGGTAGAGGGGAGCAGAGTTATGTCGCTGGTGCTGGGTCACAGCGCATCATAGGTCCAACAGGTAGCACACCTTTTGCTCCGGAAATGTATAGGGGGCCTGTGCTCTCATCCTCTCCTGCTGTTGCTTATCCACCTACCACACCCTTTCCATATCCAGGATTTCCATTTGAGACCAATTTTCCATTATCTTCAAACTCCTTTTCTGGCTGTTCAACAGCGTTTCTGGATTCATCAACGGTGGGTGGTCTTTGCTTTCCTACGATGCCCTCACAGCCAGTTGGGCCTGGTGGTGTTGTCTCGTCCACATATCCCCGTCCCTATGTTATGAATCTTCCAGGCAGTACAAGCAATGTGATGCCTGACAGCAGAAAATGGGGAAGTCAGAGTCTGGATCTTAATTCAGGCCCTGGTGGTACAGATGCTGAGCGGAGAGATGATAGATTGCCTTCTGGATTGAGGCAAGTTTCTGTTCCCAATTCACAAGCCTTGATGGATGATCAACTGAAGATGTTTCAGTTGGCAGGTGCATTGAAAAGAAAAGAACCTGATGGTGGTTGGGATGGAACTGATAGATTCAGTTACAAACACCCCTCATGGCAGTAG 4659 0.4454 MHGFGLEEWKQSRHMWPVPSNAPTVAPDSEFICKDGRKIRVGDCALFKPPEDSPPFIGIIRKLTFDKEERPSLEVNWFYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRQGVELPSGLSAFVCRRVYDIENNCLWWLTDKDHINEQQEEVEQLLDKTKLEMHGTVQSGGRSPKPLNGPTSTQPLKSGSDNVQNSSSLGVQGKGKKRDRGDQGSDSSKKERLFKVEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVERLVQLMQPDSTDKKLDLAGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNMPRESDKSVEEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARGLVDTWKKRVEAEMNMNDSKPSSTRTVSWPAKPTASEVPHLGSRKSGGFSENIAKSSVIQPSVSKNSQTKLSSGEALSKSSPGSTKPMTTSGGSNLKDQNIKVLVGSATSDLPLTPIKEEKSSGSSQSQNNSVSYSSDAKAIGSCREDAKNSTAVSMSVSKIPGSASRTRKSSNGLHGAGVAVAQKENSSAKNSTRSSPSEKVSPTQASHEKSPDRSLTDQGNNQRLILRLPNTGRSPSRGAGGGSFEEPGVMWGKASPPADNRKMKAKSDCLQTNVAPNVINDACDGNEKAGVDEAKGSPMVDERCRANEDGDKVAETSKPASSSGFVSRSRQTYDASLSPMNALVESCVKFSEASSSVSPGDEGMNLLATVAAGEISRSENVSPAVSPERKSPAADESSSRNDCKLKDSFEAGARNLGQSDGAATGDGEAIASSCIEKTSEGRTQINFSTTDLLQNAEGPCLQPETKEDTSEAILPAKKETHAEPGAAHFQEHRSRTSSFDDVQKIDHMDEGITENEKMLVSKAVGTVKTENELGKKSPELSSVVHNDNQISAEKVIGTSLSVQKGSPVTENCESVDLKKEDVTSPASGNALTVSRDEKADDMKPLEIQPDEKQTGLDSLVSDGVNDCAEENSGRKDVLVQCSGSAVHSDFPAIHGKVKELPKTCESNVDGNQSEVAGEWHAHSANPSPTVTGSDAVKLDFDLNEGFPAEDVGQGEIVRQEEPSTSSAVHVPCPLPFPISSISGGFHASITVASAAKGPVVLPENPLRSKVELGWKGSAATSAFRPAEPRKNAEIPSNTSDVTSVDATSVKPCRPPLDFDLNVADERSFEDVASRGSLESGPHDRSTVGFDLDLNRVDETPEAGSFSMSKLDIPLPSKPSLSSGLSNGGSVSRDFDLNNGPGLDEVCNEVPARSQQLKSAIPFSTAAHGPRTNSVEFGNYSWFPQGNSYSAITVPPLLPGRGEQSYVAGAGSQRIIGPTGSTPFAPEMYRGPVLSSSPAVAYPPTTPFPYPGFPFETNFPLSSNSFSGCSTAFLDSSTVGGLCFPTMPSQPVGPGGVVSSTYPRPYVMNLPGSTSNVMPDSRKWGSQSLDLNSGPGGTDAERRDDRLPSGLRQVSVPNSQALMDDQLKMFQLAGALKRKEPDGGWDGTDRFSYKHPSWQ* 1553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1704 1552 MobiDBLite consensus disorder prediction 1465 1487 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 701 723 - -
Lja2g1704 1552 Coils Coil 154 174 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 1174 1202 - -
Lja2g1704 1552 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 816 1552 - -
Lja2g1704 1552 CDD TFIIS_I 326 402 - -
Lja2g1704 1552 Gene3D - 28 246 IPR043151 -
Lja2g1704 1552 ProSiteProfiles TFIIS N-terminal domain profile. 318 404 IPR017923 -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 771 797 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 407 422 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 540 565 - -
Lja2g1704 1552 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 812 - -
Lja2g1704 1552 PANTHER BAH DOMAIN-CONTAINING PROTEIN 816 1552 - -
Lja2g1704 1552 Pfam BAH domain 38 144 IPR001025 GO:0003682
Lja2g1704 1552 Pfam TFIIS helical bundle-like domain 352 401 IPR017923 -
Lja2g1704 1552 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 269 405 IPR035441 -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 503 656 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 183 214 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 215 246 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 403 490 - -
Lja2g1704 1552 SMART BAH_4 37 152 IPR001025 GO:0003682
Lja2g1704 1552 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 306 415 IPR035441 -
Lja2g1704 1552 SMART TFS2_5 324 403 IPR003617 GO:0005634
Lja2g1704 1552 MobiDBLite consensus disorder prediction 1530 1552 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 440 490 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 577 623 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 1186 1200 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 176 247 - -
Lja2g1704 1552 ProSiteProfiles BAH domain profile. 37 152 IPR001025 GO:0003682
Lja2g1704 1552 MobiDBLite consensus disorder prediction 1465 1508 - -
Lja2g1704 1552 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 812 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 988 1004 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 974 1011 - -
Lja2g1704 1552 MobiDBLite consensus disorder prediction 510 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1704 Lja-Chr2 17087073 17094055 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja2g1704 BAH 4.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1704 - - gmx:112998769 2296.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1704 2 17087073 17094055 Lja2g1704 2 17087073 17094055 ECH