Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1691 ATGGAGATTCAGCAAAGCGTGAAGCTAATGGTCCACAAGAAATGGGGTTCACCAAAAGGAACAGCAAAAGAATCAGAGAAATTCCCAGAACCAATCACTACACCAAGGCTGAAATGGAAGAAGCTCTTCTTCCACAGCATCATCCATTCAAAACCCAACAACAACAGCAACAAAACCCAAAACTCACCACCAGAAGAGTTCCTCTGCCCCATTTCAGGTTCCATCATGGCAGACCCTGTCATCGTCTCCTCCGGCCACTCCTTCGACCGCGCCTCCGTCCAAGCCTGCAAGGATCTCAACTTCACCCCTCAACTTCCTGATGGTAACACCCCTGATTTCTCCGCCGTCATCCCCAACCTCGCCCTCAAATCCTCCATTCTCAAATGGTGCCAAACCCAAACCACCACCACCACCGCACCCAACACCGCCACCACAGAGAACCGCGTTCGCACACTAATGGCTTCCAAGCCGCCACCACCCAAAGACCCACCTGTGAATCTCTTCACCCGCGCAGAAACCCAAGTCCCTCTGCGACCAACCCACCTCTACACGAGCTCCGAGGAATCCATAGCCACTGCAACTTCATCATCAACCCCGCCACTGCAATTCTCAACCCAACCCAGTTGCTGCTACTCTTCTCCTTCTTCCTCTGAACTCGAACCAGCAACGACCCCTGAAGAAGAAGAAATCGTGTCCAAACTGAGAAACCCACAAGTCTTCACCGTCGAAGAGGCGCTAGCTTCTCTCAGAAAGCTCACCAGAACGAGAGAGGAAACCAGGGTCCACCTCTGCACCACTCGGTTACTCTCTTCCCTTCGCTCCCTCGTTGTTTCCAAGTACAGCAACGTTCAGGTGAACGCTCTCGCCTCCTTGGTGAACCTCTCTCTGGAGAAGACGAACAAGGTGAGAATCGTCCGGTCAGGGATCGTTCCGCCGGTGATCGAGGTGCTGAAGTACGGTGCCCCTGAGGCGCAGGAGCACGCTTCCGGTGCGCTCTTCAGTTTAGCTCTCGACGACGACAACAAAACCGCCATCGGAGTCCTCGGCGCTCTGCCGCCGTTGCTCCACTCGCTCCGATCGGAAAGCGAGCGGACTCGCCATGACTCGGCCTTGGCGCTTTACCATCTTTCCCTTGTGAGGAGTAACCGGGCCAAGATGGTGAAAATCGGGTCGGTTCCGGTTCTTTTGAGTATGGTCAAGTCGGGTCATATGATGGGTCGGGTTTTGTTGATATTGGGTAATTTGGGTTTCGGGTCGGATGGGCGGGCTGCGATGTTGGATGCGGGTGTGGTAGAGTGTATGGTGGGGTTGTTGAGTGGGACCGAGTTGGTGTCCGGGTCGACTCGGGAGAGTTGTGTCGCGGTGATTTATGCACTGAGTCATGGCGGGTTGAGGTTTAAGGCGGTCGCGAAGGCGGCCGGGGTGGTGGAGGTGCTGCAGAAGGTGGAGAAGTTGGGTAGTGAGAGGGCTAAAGAGAAGGTGAGGAGAATATTGGAGATGATGAGAGCTAAGGAGCCAGAAGAGGAGGATGTGGATTGGGAGGAGCTACTTGAGTCGGGGTTGGGTTCTCGAACTCGAAGCCGATTCGGGAGTGAGTTGGACGAGTCTACTGCTAACTCGGCCGAGTTCTGA 1632 0.5472 MEIQQSVKLMVHKKWGSPKGTAKESEKFPEPITTPRLKWKKLFFHSIIHSKPNNNSNKTQNSPPEEFLCPISGSIMADPVIVSSGHSFDRASVQACKDLNFTPQLPDGNTPDFSAVIPNLALKSSILKWCQTQTTTTTAPNTATTENRVRTLMASKPPPPKDPPVNLFTRAETQVPLRPTHLYTSSEESIATATSSSTPPLQFSTQPSCCYSSPSSSELEPATTPEEEEIVSKLRNPQVFTVEEALASLRKLTRTREETRVHLCTTRLLSSLRSLVVSKYSNVQVNALASLVNLSLEKTNKVRIVRSGIVPPVIEVLKYGAPEAQEHASGALFSLALDDDNKTAIGVLGALPPLLHSLRSESERTRHDSALALYHLSLVRSNRAKMVKIGSVPVLLSMVKSGHMMGRVLLILGNLGFGSDGRAAMLDAGVVECMVGLLSGTELVSGSTRESCVAVIYALSHGGLRFKAVAKAAGVVEVLQKVEKLGSERAKEKVRRILEMMRAKEPEEEDVDWEELLESGLGSRTRSRFGSELDESTANSAEF* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1691 543 SMART arm_5 418 461 IPR000225 GO:0005515
Lja2g1691 543 SMART arm_5 338 378 IPR000225 GO:0005515
Lja2g1691 543 SMART arm_5 297 337 IPR000225 GO:0005515
Lja2g1691 543 MobiDBLite consensus disorder prediction 186 227 - -
Lja2g1691 543 SUPERFAMILY ARM repeat 230 498 IPR016024 -
Lja2g1691 543 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 37 532 - -
Lja2g1691 543 Gene3D - 223 500 IPR011989 -
Lja2g1691 543 PANTHER U BOX DOMAIN-CONTAINING 37 532 - -
Lja2g1691 543 MobiDBLite consensus disorder prediction 186 221 - -
Lja2g1691 543 CDD RING-Ubox 68 99 - -
Lja2g1691 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 149 IPR013083 -
Lja2g1691 543 MobiDBLite consensus disorder prediction 524 543 - -
Lja2g1691 543 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Lja2g1691 543 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Lja2g1691 543 Pfam Armadillo/beta-catenin-like repeat 338 377 IPR000225 GO:0005515
Lja2g1691 543 SUPERFAMILY RING/U-box 53 132 - -
Lja2g1691 543 Pfam U-box domain 64 133 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1691 Lja-Chr2 16946263 16948575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1691 59 543 U-box Gene Family AT5G40140 56.102 1.84e-176 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1691 - - lja:Lj2g3v1020040.1 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1691 2 16946263 16948575 Lja2g1691 2 16946263 16948575 ECH
Lja2g1691 2 16946263 16948575 Lja1g2908 1 35165022 35170590 PCT