Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1690 ATGGCATCAGGGGGAACAGAAGCTTTTCCAGATTTGGGTAAACACTGCCAACACCATGATTGCCACCAGCTCGATTTCCTTCCTTTCACATGTGACGCCTGCAAGCAGGTATTTTGTGTGGAACATAGATCCTACAAGTCTCATGCATGCCCAAAACCTGACCACAACAGCAGGAAAGTTGTTGTCTGCGAAACATGTTCCATGTCCATTGAGACCACAAGCCAAGTGGGACAAGAGGAGGAGGAGGCACTTTTGAAGAGGCACCTCAAGTCTGGGAACTGTGATCCCAACAAGAAGAAGAAACCCATCTGCCCTGTGAAGCGCTGCAAGGAGGTTTTGACATTTTCTAATGCCAGCACCTGTAAAACTTGCCAGGTGAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGTGGCAGGGTAGCTTCAGCTTCCACATCATCTTCTGCTGCTGTTAATGGAGGGTGGAATAATAGGTTCTTGGATGCTCTTGCCTCAAGGATTAAAGGACAAGCCTGCACCAAGAGTGCTGAACGTCGTTCTACTTCTCCACCTAGTACTCCTTCTGTTAAGGCTTATTGA 588 0.483 MASGGTEAFPDLGKHCQHHDCHQLDFLPFTCDACKQVFCVEHRSYKSHACPKPDHNSRKVVVCETCSMSIETTSQVGQEEEEALLKRHLKSGNCDPNKKKKPICPVKRCKEVLTFSNASTCKTCQVKVCLKHRFPADHACGRVASASTSSSAAVNGGWNNRFLDALASRIKGQACTKSAERRSTSPPSTPSVKAY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1690 195 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 6 177 - -
Lja2g1690 195 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Lja2g1690 195 SMART AN1_Zf_4 104 145 IPR000058 GO:0008270
Lja2g1690 195 SUPERFAMILY AN1-like Zinc finger 9 59 IPR035896 -
Lja2g1690 195 Gene3D - 2 65 IPR035896 -
Lja2g1690 195 ProSiteProfiles Zinc finger AN1-type profile. 98 148 IPR000058 GO:0008270
Lja2g1690 195 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Lja2g1690 195 SUPERFAMILY AN1-like Zinc finger 96 145 IPR035896 -
Lja2g1690 195 Pfam AN1-like Zinc finger 104 142 IPR000058 GO:0008270
Lja2g1690 195 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Lja2g1690 195 MobiDBLite consensus disorder prediction 174 195 - -
Lja2g1690 195 MobiDBLite consensus disorder prediction 177 195 - -
Lja2g1690 195 Coils Coil 192 195 - -
Lja2g1690 195 Gene3D - 79 156 IPR035896 -
Lja2g1690 195 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 6 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1690 Lja-Chr2 16936365 16937911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1690 1 169 C2H2 Transcription Factor Family AT3G28210 63.743 7.72e-76 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1690 - - gmx:100500384 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1690 2 16936365 16937911 Lja2g1690 2 16936365 16937911 ECH