Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1685 ATGGAAGCCGAAGAGGAAAATGTAGACCCCACACTTCCTCAACCCACTCAATCTCACGCTTGTCCGATTAAAGATATGGAGCGGGTTGTGGCCACAGTCACTGGCTACCATGGCTTGGAGCGCTTCAATCTCATCAAGCTCATTAACTACGCCGGCGGCAGTTACTTCGGCTCCATGTCCAAATTAATCACACACCTCGTGTGTTGGAAGTTTGAAGGAAGGAAATATGATATTGCTAGAAGGCTTAGCATACCTGTAGTCAACCATCGTTGGATTGAAGATTGCATAAGGGAAGGAAAGCGCCTCCCGATAGATTCTTATACCTTGCAAAGTGGACATGAAGTAGGGCCATTGTTACTGGAAGTTCCAGCCTCCTTTGGACCGAGCAGCTGGATAAAGAATAAAGGGGTTAGTGATGGCTTATGTGATATTGAGTCTGAAAGGCAAATTACAGACATCAGTTTTGGAGCTCCCAGTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGTGCGAGGAGACAAGTTTGCATTCATCTAGACGGTTAAAGAAGGTAAAAAGAAATATTTCCTGTGATAATGAAGTTAGTACTGCGGCTGGACCTTCTCGCAAGGAAAGAAAGTTTGTGAAAAAGGTTGTTAATGAAATGGTGTCAGATCCTGTGATTTTGGATTTAAGCCCAGATGACCGGCTTTGCAGAAGGGATAGAGATAGATTACACACTGAAGCTGCAGCTACCTCTAGCCTTTCTGGTTGTGTCGATGTTAACGATCTTCAAGAAAACAGTTCAGGACCTGATGCTAGATTATGCAATCAAAATAGAGCGATGAATGGAAGTTCAGATGGCATCGAACAGATCACAGATTCAAATCAAATAGAAGATCCCCAACCTGTGGAACAAACATCAATAGATTTATGTTCCAGTGCTGGAAAGTTTATTGATGGTGATCAGGTTGATAATGTTGCTGGCTCTCCTACTTCGAATGAGTGGTCATGTGTTATATGTTTCGAAGATTTCAGTTCAACATTGGGGGTTTTGCCATGTGAACATACGTTTTGTTTGACATGCATCCAGAGATGGGCTCATCAAAGGATCTCAATGGGAAAAATATCAACCTGCCCTCTGTGCAAGGCAAGTTTTGCATGGTACAAGATATTTGAGCATGCAGCCACAGCTGATAAAAAATTAAACTCCCAGACAGTCCCATGTGACAATTTGGCCTCAGTTACTTATATCCCCATGGATCAAGAATTACCAGATAATAGCTTTGAGGATGGCGCTTGTGTAGTTTGTCGTACTCGGGGCCCTGATGATCTCATTGAGACTTGCAATGTTTGTTGGACTCGAAGAATCCATTCCTACTGCATGGACCCCCCTACATATCCTTGGACCTGCACGCACTGCAAGGAACTTCGTATGCTTTATCGTAATCAATCATATTAG 1443 0.4283 MEAEEENVDPTLPQPTQSHACPIKDMERVVATVTGYHGLERFNLIKLINYAGGSYFGSMSKLITHLVCWKFEGRKYDIARRLSIPVVNHRWIEDCIREGKRLPIDSYTLQSGHEVGPLLLEVPASFGPSSWIKNKGVSDGLCDIESERQITDISFGAPSYVLEDSCLMKKCEETSLHSSRRLKKVKRNISCDNEVSTAAGPSRKERKFVKKVVNEMVSDPVILDLSPDDRLCRRDRDRLHTEAAATSSLSGCVDVNDLQENSSGPDARLCNQNRAMNGSSDGIEQITDSNQIEDPQPVEQTSIDLCSSAGKFIDGDQVDNVAGSPTSNEWSCVICFEDFSSTLGVLPCEHTFCLTCIQRWAHQRISMGKISTCPLCKASFAWYKIFEHAATADKKLNSQTVPCDNLASVTYIPMDQELPDNSFEDGACVVCRTRGPDDLIETCNVCWTRRIHSYCMDPPTYPWTCTHCKELRMLYRNQSY* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1685 480 ProSiteProfiles Zinc finger RING-type profile. 332 377 IPR001841 -
Lja2g1685 480 SUPERFAMILY RING/U-box 327 383 - -
Lja2g1685 480 SUPERFAMILY BRCT domain 25 110 IPR036420 -
Lja2g1685 480 SMART ring_2 332 376 IPR001841 -
Lja2g1685 480 ProSitePatterns Zinc finger RING-type signature. 348 357 IPR017907 -
Lja2g1685 480 Gene3D BRCT domain 24 108 IPR036420 -
Lja2g1685 480 Pfam Ring finger domain 331 377 IPR001841 -
Lja2g1685 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 425 IPR013083 -
Lja2g1685 480 ProSiteProfiles BRCT domain profile. 18 109 IPR001357 -
Lja2g1685 480 Pfam twin BRCT domain 29 91 IPR001357 -
Lja2g1685 480 SUPERFAMILY FYVE/PHD zinc finger 418 471 IPR011011 -
Lja2g1685 480 SMART BRCT_7 23 99 IPR001357 -
Lja2g1685 480 PANTHER F5A8.9 PROTEIN 22 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1685 Lja-Chr2 16884762 16891443 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1685 47 115 Core DNA Replication Machinery Family AT4G02110 42.254 1.80e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1685 - - lja:Lj2g3v1034390.1 572.392