Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1672 ATGAAGAGGGCAAGGGATGATATCTACTCTGCCTCTGCTTCTCAATTCAAACGCCCTTTCGCTTCCTCGCGCGGTGATTCCTATGGCCAATCCCAAGTCCCTGGAGGAGGAGGAGGAGGAGGAGGAGCTGGAGGTGGCGGGGAAGCAACTACTTCCCAGAAGCTGACTACCAATGATGCGTTATCCTATTTGAAGCAAGTGAAAGACATGTTTCAGGATCAAAGGGAAAAATATGACTTGTTCCTTGAGGTCATGAAAGATTTCAAGGCCCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACCATTTGATTTTTGGGTTTAACACTTTCCTGCCAAAGGGATATGAGATAACACTTGATGAGGATGAGGCTCCTGCGAAGAAAACTGTTGAATTTGAAGAAGCTATTAGTTTTGTCAACAAGATAAAGAAACGATTCCAAAGTGATGAACATGTCTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCAGCGCCTTCTACACAGCATGCTCCATTTGGTAGAAATTCATTGCAGCGCTTCAATGAGAGGAATTCTATGACACCCATGATGCGGCAAATGCAAGTAGACAAGCAACGTTACCGACGAGACAGACTTCCTTCTCATGATCGTGACCGTGATCTTAGTGTTGAACACCCTGAAATGGATGATGACAAAACAATGATAAACTTGCACAAGGAGCAAAGGAAACGTGATAGAAGAATTCGTGATCAGGATGAGAGAGATCCCGATCTTGATAACAGCAGGGATTTGACCTCGCAACGGTTTCGTGACAAAAAGAAAACTGTCAAGAAGGCTGAAGGTTATGGGTTGGCCACTGACTTTACCTCATATGATGACAAAGATTCCTTAAGGGGCATGTACGGTGAAGCATTCAGTTTCTGCGAGAAAGTCAAGGAGAAGTTGAGCAGTTCCGATGACTACCAAACATTCTTGAAGTGCCTTAATATTTTCAACAACGGAATAATAAAAAAGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCACTCTGATCTTATGGATGAGTTTAAAGATTTCTTAGAGCGCTGTGAAAATATCGAAGGCTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTGTCCACTGATGCTCATTTATCAAGATCATCAAAGTTGGAGGACAAAGACAAAGATCAGAAGCGAGAGATGGATGGAGCTAAAGAGAAGGATAGATACAAGGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTTAGTGACTGTAAACGGTGTACTCCCAGCTACCGGCTTCTCCCTTCAGATTATCCAATTCCTACGGCTAGTCAGCGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTGTCTGTGACTTCAGGAAGTGAAGATTACTCTTTCAAACATATGCGCAAGAATCAATATGAAGAAAGCCTGTTTAGATGTGAAGATGACAGATTTGAGCTGGACTTGTTATTGGAGTCTGTAAGTTCAGCTTCTAAACGTGCCGAGGAATTGTATAACAACATTAATGAAAATAAAATCAGTGTGGAGGCTCTGAGCCGTATTGAAGATCATTTCACTGTTTTGAACTTAAGGTGCATTGAGCGTCTATATGGTGACCATGGTCTTGACGTTATAGACATACTGCGTAAAAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAGGAGGAGTGGAATAGGTGTCGTTCCGATTTTAATAAAGTTTGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTATTTCAAGCAACAAGACTCAAAGAACTTGAGCACAAAATCTTTAGTGGCTGAGATTAAAGAAATCAAAGAGAAGCTGCAGAAAGAGGATCACATTATTCAGTCTATTGCTGCTGAAAATAGACAGCCTCTAATTCCACATCTGGAATTTGAATATTCGGATGGTGGGATTCATGAAGACCTGTATAAACTTGTTCAGTATTCATGTGAGGAGGTATTCTCAAGCAAAGAATTATTAAATAAGATTATGAGGCTTTGGAGTACCTTCTTGGAGCCGATGCTTGGTGTTACTTCCCAATCTCATGGGACAGAAAGGGTTGAGGACAGGAAAGCAGGGCATAGTAGTCGCAACTTTGCTGCATCAAATGTAGGAGGTGATGGAAGCCCACACAGAGACTCTATTTCAACAAATTCAAGGTTACCAAAATCTGACAAGAATGAAGTTGATGGTAGAGTCACTGAAGTGAAGAATATTCACCGGACTAGTGTAGCCGCCAATGATAAAGAAAATGGGTCTGTTGGTGGTGAACTTGTTTGTAGAGATGATCAATTAATGGATAAAGGGCTGAAAAAAGTAGAATGCAGTGATAAAGCCGGGTTTAGTAAACAATTTGCCTCTGATGAGCAAGGAGTTAAAAACAATCCATCTATTGCAATTCGAGGAGAAAACAGCTTGAACAGAACCAACTTAGATGTGTCTCCAGGCTGTGTATCTGCTCCATCTCGACCTACGGATGCTGATGACTCTGTAGCCAAGTCTCAGACTGTTAATTTACCATTGGTGGAGGGAGGTGACATTGCAGCTCCAGTACCAGTGGCCAATGGGGTATTAGTTGAGAACAGTAAAGTCAAAAGCCATGAAGAATCTTCTGGGCCTTGCAAAGTCGAAAAAGAAGAGGGTGAATTATCACCAAATGGTGACTCCGAGGAAGATTTTGTTGCCTATAGAGATTCGAATGCACAGTCAATGGCTAAGTCAAAGCACAATATTGAAAGAAGGAAATATGAGTCCAGAGATAGAGAGGAAGAATGTGGTCCAGAGACTGGAGGTGATAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGGGAAGATGTCTCAGGCAGTGAGTCCGCTGGCGATGAATGCTTCCAGGAAGACCATGAGGAGGATGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGTGATGCCCAAGGTGGAGGGGATAGCTCATCTTTGCCTTTGTCAGAGAGGTTCCTTTCGTCTGTGAAGCCTCTCACAAAGCATGTATCGGCAGTTTCATTTGCTGAAGAAATGAAGGATTCAAGGGTGTTTTATGGGAATGACGATTTCTATGCGCTTTTTAGGCTTCATCAAATTCTTTACGAGAGGATCTTATCAGCGAAAATAAATTCAATGAGTGCTGAAATGAAATGGAAGGCAAAAGATGCTAGTTCCCCTGATCCTTACTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGTTGAGAATTCAAAGTTTGAAGATGAGTGCCGAGCAATTACTGGAAACCAGTCTTATGTCTTATTCACATTGGATAAATTGATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACCGATGACGAAGACAGTAAGCTTCTCCAATTATATGAGTATGAAAAGTCTCGGAAACCTGGGAAATTAAATGATTCAGTATACCATGCAAATGCGCATGTCATCCTTCATGAGGAGAATATATATCGTTTTCAATGTTCATCTACCCCCCCACGACTATCCATCCAGCTCATGGACTATATGAATGAAAAGCCTGAGTTGTCTGCCGTTTCTATTGATCCGAATTTTTCATTTTATCTGCACAATGATTTTCTGTCTGTCCTTCCTGGCAAAAAGGAACCCCACGGCATTTTACTGCAAAGAAACAAGGGCAAATATGGAAAATTAGATGATCTTTCTGCGATATGCGCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAAATTGCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCGAGGACGAAAAGACGAACTCCATCAGCAACCACAACTTCCCGGTCTCGCAAGGACAGAGAAGAAAGATACCGCAGATTGTTGGTTTCCTCATCATAA 4152 0.415 MKRARDDIYSASASQFKRPFASSRGDSYGQSQVPGGGGGGGGAGGGGEATTSQKLTTNDALSYLKQVKDMFQDQREKYDLFLEVMKDFKAQRTDTAGVIARVKELFKGHNHLIFGFNTFLPKGYEITLDEDEAPAKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPFGRNSLQRFNERNSMTPMMRQMQVDKQRYRRDRLPSHDRDRDLSVEHPEMDDDKTMINLHKEQRKRDRRIRDQDERDPDLDNSRDLTSQRFRDKKKTVKKAEGYGLATDFTSYDDKDSLRGMYGEAFSFCEKVKEKLSSSDDYQTFLKCLNIFNNGIIKKNDLQNLVTDLLGKHSDLMDEFKDFLERCENIEGFLAGVMSKKSLSTDAHLSRSSKLEDKDKDQKREMDGAKEKDRYKEKYMGKSIQELDLSDCKRCTPSYRLLPSDYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDLLLESVSSASKRAEELYNNINENKISVEALSRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWNRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKLQKEDHIIQSIAAENRQPLIPHLEFEYSDGGIHEDLYKLVQYSCEEVFSSKELLNKIMRLWSTFLEPMLGVTSQSHGTERVEDRKAGHSSRNFAASNVGGDGSPHRDSISTNSRLPKSDKNEVDGRVTEVKNIHRTSVAANDKENGSVGGELVCRDDQLMDKGLKKVECSDKAGFSKQFASDEQGVKNNPSIAIRGENSLNRTNLDVSPGCVSAPSRPTDADDSVAKSQTVNLPLVEGGDIAAPVPVANGVLVENSKVKSHEESSGPCKVEKEEGELSPNGDSEEDFVAYRDSNAQSMAKSKHNIERRKYESRDREEECGPETGGDNDADADDEDSENVSEAGEDVSGSESAGDECFQEDHEEDDIEHDDVDGKAESEGEAEGMCDAQGGGDSSSLPLSERFLSSVKPLTKHVSAVSFAEEMKDSRVFYGNDDFYALFRLHQILYERILSAKINSMSAEMKWKAKDASSPDPYSRFMNALYNLLDGSVENSKFEDECRAITGNQSYVLFTLDKLIYKLIRQLQTVATDDEDSKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEENIYRFQCSSTPPRLSIQLMDYMNEKPELSAVSIDPNFSFYLHNDFLSVLPGKKEPHGILLQRNKGKYGKLDDLSAICAAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRTKRRTPSATTTSRSRKDREERYRRLLVSSS* 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1672 1383 Pfam C-terminal domain of Sin3a protein 1102 1349 IPR031693 -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 1 52 - -
Lja2g1672 1383 ProSiteProfiles PAH domain profile. 137 207 IPR003822 GO:0006355
Lja2g1672 1383 SUPERFAMILY PAH2 domain 134 206 IPR036600 GO:0006355
Lja2g1672 1383 MobiDBLite consensus disorder prediction 241 311 - -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 928 1071 - -
Lja2g1672 1383 ProSiteProfiles PAH domain profile. 332 405 IPR003822 GO:0006355
Lja2g1672 1383 MobiDBLite consensus disorder prediction 930 951 - -
Lja2g1672 1383 Pfam Sin3 family co-repressor 471 563 IPR013194 -
Lja2g1672 1383 Gene3D Paired amphipathic helix 335 407 IPR036600 GO:0006355
Lja2g1672 1383 Gene3D Paired amphipathic helix 59 121 IPR036600 GO:0006355
Lja2g1672 1383 MobiDBLite consensus disorder prediction 208 311 - -
Lja2g1672 1383 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1371 - -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 15 30 - -
Lja2g1672 1383 SUPERFAMILY PAH2 domain 340 405 IPR036600 GO:0006355
Lja2g1672 1383 MobiDBLite consensus disorder prediction 746 802 - -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 1030 1045 - -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 764 790 - -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 879 899 - -
Lja2g1672 1383 SUPERFAMILY PAH2 domain 51 122 IPR036600 GO:0006355
Lja2g1672 1383 MobiDBLite consensus disorder prediction 208 238 - -
Lja2g1672 1383 Coils Coil 430 450 - -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 997 1015 - -
Lja2g1672 1383 ProSiteProfiles PAH domain profile. 53 123 IPR003822 GO:0006355
Lja2g1672 1383 Pfam Paired amphipathic helix repeat 76 120 IPR003822 GO:0006355
Lja2g1672 1383 Pfam Paired amphipathic helix repeat 358 402 IPR003822 GO:0006355
Lja2g1672 1383 Pfam Paired amphipathic helix repeat 160 204 IPR003822 GO:0006355
Lja2g1672 1383 MobiDBLite consensus disorder prediction 975 996 - -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 427 452 - -
Lja2g1672 1383 Coils Coil 542 562 - -
Lja2g1672 1383 SMART hdac_interact2seq4b 469 569 IPR013194 -
Lja2g1672 1383 PANTHER SIN3B-RELATED 1 1371 IPR039774 GO:0003714
Lja2g1672 1383 MobiDBLite consensus disorder prediction 1354 1375 - -
Lja2g1672 1383 MobiDBLite consensus disorder prediction 428 452 - -
Lja2g1672 1383 Gene3D Paired amphipathic helix 135 208 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1672 Lja-Chr2 16766349 16782378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1672 39 156 WRKY Transcription Factor Family AT4G12020 49.580 1.33e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g1672 Sin3a_C 1.9e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1672 K11644 - gmx:100807181 2280.75