Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1671 ATGGGTGGGGATCAGAATGCTGTTTCCATGGTTAGAAAGAAGAAGAAGGCGAAGAGTGGCTCTGTCATGTGCATTTTCATGCATGCCGATGGCCTAGACTGGTTTCTCATGCTTTTGGGTTTGTTTGGGGCCATTGGAGATGGTATAGGCACCCCTCTTGTGTTGTTTATCAGTAGCAAAATCATGAATAGTATTGGCGATTCTTCCACCAGCACAAACAACACTTTCGTCCATAACATCAATGAGAATGCAGTGAATTTGTGTTATTTGGCTTGTGGTTCTTTTGTTGCTTGCTTCCTTGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCCAGATATTTGAAAGCAATTCTCAGACAAGAAGTAGCATACTTTGATTTGCATGTCACAAGCACATCAGAGGTCATCACCAGCGTCTCTAATGACAGCCTTGTAATTCAAGATGCTCTTAGTGAAAAGGTCCCAAATTTTTTGATGAATGCGTCTATGTTTATTGGGAGCTACATAGCAGCTTTTGCATTACTATGGAGATTGGCAATTGTGGGGTTCCCTTTTACTGTTCTTCTTGTGATCCCTGGTTTGATGTATGGGAGGACCTTGATGAGTTTGTCTAGAAAGATTAGTATAGAGTATAACCATGCCGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGCAGGGGAAAGCAAGACCATTAATGCTTTCTCTGAAGCTCTACAAGGCTCTGTGAAATTGGGGCTGAAACAAGGCCTAGCTAAAGGCTTAGCCATAGGAAGCAATGGCCTTGTCTTTGCTATTTGGTCCTTCATGTCCTATTATGGTAGCAGAATGGTCATGTACCATGGCGCTAATGGAGGGACTGTGTATGTAGTTGGAGCCTCCATAGCACGTGGTGGATTGTCTTTAGGTTCTGGTTTATCCAATGTGAAGTACTTCTCAGAAGCGAAAACCGCTGCAGAGCGCATAATGGAAGTAATAAACAGGGTTCCCAAGATTGACTCTGACAACATGGCTGGGGAGATTCTGGAAAATGTTTCAGGGGAAGTGGAATTTGATCATGTTGAGTTTGTGTACCCTTCAAGGCCAGAGAGTGTGATTCTCAATGGCATGTGTTTGAAGGTTCCAGCAGGGAAGACAGTGGCCTTGGTGGGAGGGAGTGGTTCAGGGAAATCAACAGTGATATCACTTTTGCAGAGGTTTTATGATCCTGTTGGGGGAGAGATAAGGCTTGATGGGGTGGCAATTCACAAGTTGCAGTTGAAGTGGTTAAGGTCTCAGATGGGTCTTGTGAGCCAAGAGCCTGCTCTGTTTGCAACTAGCATTAAGGAAAATATACTGTTTGGGAGAGAGGATGCAACAGAGGAAGAGGTTGTTGAAGCTGCCAAAGCCTCCAATGCTCATAATTTCATTTCACAGTTGCCACTTGGATATGATACTCAGGTTGGGGAGAGAGGAGTCCAAATGTCTGGTGGACAAAAGCAAAGAATAGCCATCGCACGTGCAATAATAAAGAGACCAAGAATCCTCTTGCTTGATGAAGCAACAAGCGCACTGGACTTCGAGTCTGAACGAGCTGTGCAAGAAGCTCTTGACAAGGCTGTAGTCGGCCGCACCACCATCATCATCGCCCACCGCCTCTCCACCATCCGAAACGCCGACCTCATTGTCGTCGTCCAAAACGGAAAAGTCATGGAAACCGGCTCCCACGACACCCTCATCCAAAACGACACCGGCCTCTACACCTCCCTCATCCGCCTCCAACAAACAGAAAATACCACAACAAACCAAAATGACTTCCTCCTAAGTCGAGACAACATCATTCACAACACGAGCAGTCGTCGACTCTCCCTCGTGAGTCGTTCTAGCTCTTTCACTTCATCAATGCCATGTGCTGAAGATGATCATGTTGTTGTTGACGACGAGGTTGTTAATGTTGTGGACAAGAAAGCGCTGCCTATTCCTTCGTTTCGAAGGCTGCTTGCGATGAACGTGCCGGAGTGGAAGCAAGCGTGTTTGGGGTGTTTAAATGCGGTGTTGTTCGGCGCGGTGCAGCCTGTGTATGCGTTTGCGTTGGGGTCGGTGATATCAGTTTATTTTCTGGAGGACCATGATGAGATGAAGAGGAAGATTAGGATTTATGCGTTTTGCTTTTTGGGGCTGGCTGTGTTCTCCTTGATTGTGAATGTGCTCCAGCATTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAGAGGATCAGAGAAAGAATGCTCTCCAAGATTCTGACCTTTGAGGTTGGGTGGTTTGATGAGGATGAGAATTCAACCGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCTAATGTGGTAAGGTCTTTGGTGGGAGACAGAATGGCTCTAGTGGTACAAACAATCTCAGCAGTGATAATAGCATTCACCATGGGCCTGGTAATTGCATGGAGGCTCGCCATCGTCATGATCGTGGTTCAGCCCATCATCATAGCCTGCTTCTACACAAGACGCGTCCTTCTCAAAAGCATGTCCAGCAAGGCCATCAAGGCCGAAGGAGAAAGTAGCAAGATTGCCGCGGAAGCCGTTTCCAACCTCCGAACCATCACTGCTTTCTCCTCCCAAGACAGGATCCTCAAAATGCTCGAAAAAGCCCAAGAAGGCCCGAGGCGCGAGAGCATCAGGCAGTCATGGTTTGCAGGCTTTGGGCTTGCATTCTCCGAAAGCCTGACCTTTTTCACTTGGGCTTTGGATTTTTGGTATGGTAGCAAGCTCATTTCCCAAGGGTATATAAAAGCAAAAGCACTTTTTGAGACTTTTATGATCTTGTTGAGCACAGGAAGGATGATTGCTGATGCTGGTAGCATGACCAATGACCTTGCCAAAGGTTCAGATGCTGTGGGTTCTGTTTTTGCAATCCTTGACAGGTGCACCAAGATTGAGCCTGATGAGAAAGATGGGTACGAGCCTGAGAAAATAACAGGGAAGATTGAACTTCATGATGTACATTTTGCATACCCAGCAAGACCTGATGTGATGATCTTCCAAGGCTTCTCAATCAAAATTAGTCCAGGGAAGTCAACTGCATTGGTAGGGCAAAGTGGGTCTGGGAAATCAACAATCATAGGGTTGATAGAGAGATTCTATGATCCTTTCAAAGGGAGAGTGACCATAGATGATAAAGACATTAAATCATACAATTTAAGGGCATTAAGGATGCACATTGCACTTGTGAGCCAAGAGCCAACACTGTTTGGTGGGACTATTAGAGAGAACATTGCATATGGATCATCAGCATCTGATAAGGTTGGTGAGAGTGAGATCATAGAGGCAGCTAAAGAAGCCAATGCTCATGATTTCATAGCAAGTTTGAAAGAGGGTTATGACACATTGTGTGGGGATAGAGGAGTTCAACTTTCTGGGGGTCAGAAGCAGAGGGTTGCAATAGCTAGAGCTATATTGAAGAACCCTGAGGTGTTGCTTTTGGATGAAGCAACTAGTGCTCTTGATAGCCAGTCAGAGAAACTGGTGCAGGATGCTTTGGAGAGAGTCATGGTGGGGAGGACTAGTGTGGTGGTGGCTCACAGGTTGAGCACCATTCAGAACTGTGATCTGATTGCTGTGTTGGATAAGGGGAGGGTGGTGGAGAAAGGGTCCCATTCAAACTTGTTGGCAAAGGGACCAAGTGGTGCTTATTACTCTTTGGTGAGTCTGCAGAGAAGACCAAGCAATTACACTGTTGCTGCTGACTCTGCAGGTGAAATCAACTAA 3798 0.4581 MGGDQNAVSMVRKKKKAKSGSVMCIFMHADGLDWFLMLLGLFGAIGDGIGTPLVLFISSKIMNSIGDSSTSTNNTFVHNINENAVNLCYLACGSFVACFLEGYCWTRTGERQAARMRARYLKAILRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALSEKVPNFLMNASMFIGSYIAAFALLWRLAIVGFPFTVLLVIPGLMYGRTLMSLSRKISIEYNHAGTIAEQAISSIRTVYSFAGESKTINAFSEALQGSVKLGLKQGLAKGLAIGSNGLVFAIWSFMSYYGSRMVMYHGANGGTVYVVGASIARGGLSLGSGLSNVKYFSEAKTAAERIMEVINRVPKIDSDNMAGEILENVSGEVEFDHVEFVYPSRPESVILNGMCLKVPAGKTVALVGGSGSGKSTVISLLQRFYDPVGGEIRLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATEEEVVEAAKASNAHNFISQLPLGYDTQVGERGVQMSGGQKQRIAIARAIIKRPRILLLDEATSALDFESERAVQEALDKAVVGRTTIIIAHRLSTIRNADLIVVVQNGKVMETGSHDTLIQNDTGLYTSLIRLQQTENTTTNQNDFLLSRDNIIHNTSSRRLSLVSRSSSFTSSMPCAEDDHVVVDDEVVNVVDKKALPIPSFRRLLAMNVPEWKQACLGCLNAVLFGAVQPVYAFALGSVISVYFLEDHDEMKRKIRIYAFCFLGLAVFSLIVNVLQHYSFAYMGEYLTKRIRERMLSKILTFEVGWFDEDENSTGAICSRLAKEANVVRSLVGDRMALVVQTISAVIIAFTMGLVIAWRLAIVMIVVQPIIIACFYTRRVLLKSMSSKAIKAEGESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPRRESIRQSWFAGFGLAFSESLTFFTWALDFWYGSKLISQGYIKAKALFETFMILLSTGRMIADAGSMTNDLAKGSDAVGSVFAILDRCTKIEPDEKDGYEPEKITGKIELHDVHFAYPARPDVMIFQGFSIKISPGKSTALVGQSGSGKSTIIGLIERFYDPFKGRVTIDDKDIKSYNLRALRMHIALVSQEPTLFGGTIRENIAYGSSASDKVGESEIIEAAKEANAHDFIASLKEGYDTLCGDRGVQLSGGQKQRVAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGRVVEKGSHSNLLAKGPSGAYYSLVSLQRRPSNYTVAADSAGEIN* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1671 1265 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Lja2g1671 1265 Gene3D - 996 1256 IPR027417 -
Lja2g1671 1265 Pfam ABC transporter transmembrane region 685 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1671 1265 Pfam ABC transporter transmembrane region 37 303 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1671 1265 CDD ABC_MTABC3_MDL1_MDL2 1006 1248 - -
Lja2g1671 1265 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 29 1254 IPR039421 -
Lja2g1671 1265 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Lja2g1671 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1248 IPR027417 -
Lja2g1671 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Lja2g1671 1265 Pfam ABC transporter 1025 1176 IPR003439 GO:0005524
Lja2g1671 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Lja2g1671 1265 Gene3D ABC transporter type 1, transmembrane domain 25 974 IPR036640 GO:0005524|GO:0016021
Lja2g1671 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1245 IPR003439 GO:0005524
Lja2g1671 1265 Gene3D - 352 601 IPR027417 -
Lja2g1671 1265 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016021
Lja2g1671 1265 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524
Lja2g1671 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1671 1265 SMART AAA_5 389 575 IPR003593 -
Lja2g1671 1265 SMART AAA_5 1033 1228 IPR003593 -
Lja2g1671 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Lja2g1671 1265 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 29 1254 - -
Lja2g1671 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 989 - -
Lja2g1671 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1671 1265 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Lja2g1671 1265 SUPERFAMILY ABC transporter transmembrane region 665 990 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1671 Lja-Chr2 16734465 16742918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1671 10 1249 Calmodulin-binding Proteins AT2G36910 44.672 0.0 1060
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1671 2 16734465 16742918 Lja2g1671 2 16734465 16742918 ECH