Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1670 ATGGGTGGGGATCAGAATGCTGTTTCCATGGTTAGAAAGAAGAAGAAGGCGAAGAGTGGCTCTGTCATGTGCATTTTCATGCATGCCGATGGCCTAGACTGGTTTCTCATGCTTTTGGGTTTGTTTGGAGCCATTGGAGATGGTATAGGCACCCCTCTTGTGTTGTTTATCACTAGCAAAATCATGAATAGTATTGGCGGTTCTTCCACCAGCACAAACAACACTTTCGTCCATAACATCAATGAGAATGCAGTGAATATGTGTTATTTGGCTTGTGGCTCTTTTGTTGCTTGCTTCCTTGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCCAGATATTTGAAAGCAATTCTCAGACAAGAAGTAGCATATTTTGATTTGCATGTCACAAGCACATCAGAGGTCATCACCAGCGTCTCTAATGACAGCCTTGTGATTCAAGATGCTCTTAGTGAAAAGGTCCCAAATTTTTTGATGAATGCGTCTATGTTTATTGGGAGCTACATAGCAGCTTTTGCATTACTATGGAGATTGGCAATTGTGGGGTTCCCTTTTATTGTTCTTCTTGTGATCCCTGGTTTGATGTATGGGAGGACCTTGATGAGTTTGGCTAGAAAGATCAGTATAGAGTATAACCATGCCGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGCAGGGGAAAGCAAGACCATTAATGCTTTCTCTGATGCTCTACAAGGCTCTGTGAAATTGGGGCTGAAACAAGGCCTAGCTAAAGGCTTAGCCGTAGGAAGCAATGGTCTTGTCTTTGCTATTTGGTCCTTCTTGTCCTATTATGGTAGCAGAATGGTCATGTACCATGGTGCTAAAGGAGGGACTGTGTTTGTAGTTGGAGCCTCCATAGCCCTTGGTGGATTGTCTTTAGGTTCTGGTTTATCCAATGTGAAGTACTTCTCAGAGGCGAAAACCGCTGCAGAACGCATAATGGAAGTCATAAACAGGGTTCCCAAGATTGATTCTGACAACATGGCTGGGGAGATTCTGGAAAATGTTTCAGGGGAAGTGGAATTTGATCATGTTGAGTTTGTGTACCCTTCAAGGCCAGAGAGTGTGATTCTCAATGACATGTGTTTGAAGGTTCCAGCAGGGAAGACAGTGGCTTTGGTGGGAGGGAGTGGGTCAGGGAAATCAACAGTGATATCACTTTTGCAGAGGTTTTATGATCCTGTTGGGGGAGAGATAAGGCTTGATGGGGTGGCAATTCACAAGTTGCAGTTGAAGTGGTTAAGGTCTCAGATGGGTCTTGTGAGCCAAGAGCCTGCTCTGTTTGCAACTAGCATTAAGGAAAATATACTGTTTGGGAGAGAGGATGCAACAGAGGAAGAGGTTGTTGAAGCTGCCAAAGCCTCCAATGCTCATAATTTCATTTCACAGTTGCCACTTGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCCGGTGGACAAAAACAAAGAATCGCCATCGCACGTGCGATAATAAAGAGACCAAGAATCCTCTTGCTTGATGAAGCAACAAGCGCACTGGACTCCGAGTCTGAACGAGTCGTGCAAGAAGCTCTCAACAAGGCTGCAGTCGGCCGCACCACCATCATCATCGCCCACCGCCTCTCCACCATCCGAAATGCCAACCTCATTGCAGTTGTCCAAAACGGCAACGTCATGGAAACCGGCTCCCACGACACCCTCATTCAAAACGACACCGGCCTCTACACCTCCCTCATCCGCCTCCAACAAACAGAAAATGCCACAACAAACCAAAATGACTTCCTCCTAAGCCGGGACAACATCATTCACAGCACGAGCAGTCGTAGACTCTCCCTCGTGAGCCGTTCGAGCTCTTTCAGTTCATCAATGGCACGTGCTGAAGATGATGATGTTGTTGCTAACGACGAGGTTGTTAATGTTGTGGACAAGAAAGCATTGCCTGTCCCTTCGTTTCGAAGGCTGCTTGCGATGAACGTGCCAGAGTGGAAGCAAGCATGTTTGGGGTGTTTGAATGCGGTGTTGTTTGGTGCGGTGCAGCCTGTGTATGCGTTTGCATTGGGGTCGGTGGTATCGGTTTATTTTCTGGAGGACCATGATGAGATGAAGAGGAAGATTAGGATCTATGCGTTTTGCTTTTTGGGGCTGGCTGTTTTCTCCTTGATTGTGAATGTGCTTCAGCATTATAGCTTTGCGTACATGGGAGAGTACTTGACTAAGAGGATCAGGGAAAGAATGCTTTCCAAGATACTCACTTTTGAGGTTGGGTGGTTTGATGAGGATGAGAATTCCACCGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCTAACGTGGTAAGGTCTTTGGTGGGAGATAGAATGGCTCTAGTGGTACAAACAATCTCAGCAGTGATAATAGCATTCACCATGGGCCTGGTAATTGCATGGAGGCTCGCCATCGTCATGATCGCGGTTCAGCCCATCATCATAGCCTGCTTCTACACAAGACGCGTCCTTCTCAAAAGCATGTCCAGCAAGGCCATCAAGGCCCAAGGAGAAAGTAGCAAGATTGCCGCGGAAGCCGTCTCCAACCTCCGAACCATCACCGCTTTCTCCTCCCAAGATAGGATCCTCAAAATGCTTGAAAAAGCCCAAGAAGGCCCGAGGCGCGAGAGCATCAGGCAGTCATGGTTTGCAGGCTTTGGGCTTGCATTCTCCCAAAGCCTGACTTTTTGCACTTGGGCTTTGGATTTTTGGTATGGTGGCAAGCTCATTTCCCAAGGGTATATAAAAGCAAAAGCACTTTTTGAGACTTTTATGATCTTGGTGAGCACAGGAAGGGTGATTGCTGATGCTGGTAGCATGACCAATGACCTTGCCAAAGGTTCAGATGCTGTGGGTTCTGTTTTTGCAATCCTTGACAGGTGCACCAAGATTGAGCCTGATGAGAAAGATAGGTGCAAGCCTGAGAAAATAACAGGGAAGATTGAACTTCATGATGTACATTTTGCATACCCAGCAAGACCTGATGTGATGATCTTCCAAGGCTTCTCAATCAAAATTAGTCCAGGGAAGTCAACTGCATTGGTAGGGCAAAGTGGGTCTGGGAAATCAACAATCATAGGGTTGATAGAGAGATTCTATGATCCTTTCAAAGGGAGAGTGACCATTGATGGTAAAGACATTAAATCTTACAATTTAAGGGCATTAAGGATGCACATTGCACTTGTGAGCCAAGAGCCAACACTGTTTGGTGGGACTATTAGAGAGAACATTGCATATGGATCACATTCAGCATCTGATAAGATTGATGAGAGTGAGATCATAGAGGCAGCAAAAGCAGCCAATGCTCATGATTTCATAGCAAGTTTGAAAGAGGGTTATGACACTTTGTGTGGGGATAGAGGAGTGCAACTTTCCGGGGGTCAGAAGCAGAGGGTTGCAATAGCTAGAGCTATATTGAAGAACCCTGAGGTGTTGCTTTTGGATGAAGCAACTAGTGCTCTTGATAGCCAGTCTGAGAAACTGGTGCAGGATGCTTTGGAGAGGGTTATGGTGGGGAGGACTAGTGTGGTGGTGGCTCACAGGTTGAGCACCATTCAAAACTGTGATCTGATTGCTGTGTTGGATAAGGGGAGGGTGGTGGAGAAAGGGTCCCATTCAAACTTGTTGGCTAAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTCTGCAGAGAAGACCAAGCAATTACACTGTTGCTACTGACTCTACAGGTGAAATCAACTAA 3801 0.4599 MGGDQNAVSMVRKKKKAKSGSVMCIFMHADGLDWFLMLLGLFGAIGDGIGTPLVLFITSKIMNSIGGSSTSTNNTFVHNINENAVNMCYLACGSFVACFLEGYCWTRTGERQAARMRARYLKAILRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALSEKVPNFLMNASMFIGSYIAAFALLWRLAIVGFPFIVLLVIPGLMYGRTLMSLARKISIEYNHAGTIAEQAISSIRTVYSFAGESKTINAFSDALQGSVKLGLKQGLAKGLAVGSNGLVFAIWSFLSYYGSRMVMYHGAKGGTVFVVGASIALGGLSLGSGLSNVKYFSEAKTAAERIMEVINRVPKIDSDNMAGEILENVSGEVEFDHVEFVYPSRPESVILNDMCLKVPAGKTVALVGGSGSGKSTVISLLQRFYDPVGGEIRLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATEEEVVEAAKASNAHNFISQLPLGYDTQVGERGVQMSGGQKQRIAIARAIIKRPRILLLDEATSALDSESERVVQEALNKAAVGRTTIIIAHRLSTIRNANLIAVVQNGNVMETGSHDTLIQNDTGLYTSLIRLQQTENATTNQNDFLLSRDNIIHSTSSRRLSLVSRSSSFSSSMARAEDDDVVANDEVVNVVDKKALPVPSFRRLLAMNVPEWKQACLGCLNAVLFGAVQPVYAFALGSVVSVYFLEDHDEMKRKIRIYAFCFLGLAVFSLIVNVLQHYSFAYMGEYLTKRIRERMLSKILTFEVGWFDEDENSTGAICSRLAKEANVVRSLVGDRMALVVQTISAVIIAFTMGLVIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQGESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPRRESIRQSWFAGFGLAFSQSLTFCTWALDFWYGGKLISQGYIKAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRCTKIEPDEKDRCKPEKITGKIELHDVHFAYPARPDVMIFQGFSIKISPGKSTALVGQSGSGKSTIIGLIERFYDPFKGRVTIDGKDIKSYNLRALRMHIALVSQEPTLFGGTIRENIAYGSHSASDKIDESEIIEAAKAANAHDFIASLKEGYDTLCGDRGVQLSGGQKQRVAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGRVVEKGSHSNLLAKGPSGAYYSLVSLQRRPSNYTVATDSTGEIN* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1670 1266 SMART AAA_5 389 581 IPR003593 -
Lja2g1670 1266 SMART AAA_5 1033 1229 IPR003593 -
Lja2g1670 1266 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 29 1255 - -
Lja2g1670 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Lja2g1670 1266 Pfam ABC transporter 1025 1177 IPR003439 GO:0005524
Lja2g1670 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1670 1266 SUPERFAMILY ABC transporter transmembrane region 665 990 IPR036640 GO:0005524|GO:0016021
Lja2g1670 1266 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016021
Lja2g1670 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1249 IPR027417 -
Lja2g1670 1266 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Lja2g1670 1266 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Lja2g1670 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1670 1266 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 29 1255 IPR039421 -
Lja2g1670 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Lja2g1670 1266 CDD ABC_MTABC3_MDL1_MDL2 1006 1249 - -
Lja2g1670 1266 Gene3D ABC transporter type 1, transmembrane domain 25 975 IPR036640 GO:0005524|GO:0016021
Lja2g1670 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1246 IPR003439 GO:0005524
Lja2g1670 1266 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 989 - -
Lja2g1670 1266 Pfam ABC transporter transmembrane region 37 304 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1670 1266 Pfam ABC transporter transmembrane region 685 953 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1670 1266 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Lja2g1670 1266 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Lja2g1670 1266 Gene3D - 996 1257 IPR027417 -
Lja2g1670 1266 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
Lja2g1670 1266 Gene3D - 352 601 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1670 Lja-Chr2 16695019 16704412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1670 10 1250 Calmodulin-binding Proteins AT2G36910 44.647 0.0 1071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1670 2 16695019 16704412 Lja2g1670 2 16695019 16704412 ECH