Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1657 ATGGGGTTTGGGGAAATATGGTCACAACTAGGCTCAATTATGGCTAGCATCATGTTTGTGTACGCCATGTTTGAGAGGTTCTTCCCACCGCATCTTCGTATCTATCTTCGAAAATACACACAAAAACTCACAGGGCTCTTCTACCCTTATATCCAAATAACCTTCCCTGAGAATACAGGGGAAAAACTCAGAAGAAGTGAAGCTTACACTAAAATCCAAACATACCTCGGTGAGTACTCATCTCAAAGTGCCAAAAGACTTAAAGCTGAAGTGGTAAAAGATAGCCAATCCCCACTAGTTCTCAGCATGGATGACAATGAAGAGATCACAGATGAGTTCAAAGGGGTCAAACTCTGGTGGGCTGCACACTACAGCATCAATAAATCACAGTCATTTTCATTCTTCCCTTCTTCAGATGAGAAGAGGTTCTTTAGACTCACTTTCCACAAACGGTACCGTGATCTCATCACTACTTCTTACATCCAACATGTATTGGATGAAGGCAAGGAAATTGCATTAAGGAACAGACAGTTGAAGCTGTACACCAACAACCCCAGCAACGATTGGTTTAGATACAAAAGCACAAAGTGGAGCCACATACATTTTGAGCACCCTGCAAGGTTTGAAACACTGGCTATGGATCCAAAGAAGAAGGAAGAGATTATAAACGACCTTGACATAGGGTATTTGTTGTATGGTCCTCCAGGAACTGGCAAATCAACCATGATAGCTGCCATGGCTAATTTCATGAACTATGATGTGTATGATCTTGAATTGACAGCAGTCAAGGAAAACACTGAGCTGAAAAAATTGCTGATTGAAACATCCAGCAAATCAATCATAAAAGCTGAAGAAGAAGAGAAGAAGGGCAGCAAGGTAACACTATCTGGGCTGTTGAATTTCATTGATGGGATTTGGTCAGCATGTGGGGGAGAGAGGATCATCATTTTCACAACCAACTTTGTGGACAAACTTGATCCTGCTTTGATTAGGAGAGGGAGGATGGACATGCACATAGAAATGTCCTATTGTAGCTATGAAGCCTTCAAGGTGCTTGCCAAGAACTACTTGGATGTTGTTGATGATTCACATAGCTTCTTTCCCATTATTGAGAAGTTGCTGGGAGAGACCAACATGTCTCCTGCTGATGTTGCTGAGAATCTGATGCCAAAGTCAAGAACTAAAGATTCTGATACTTCCTTGAAGAATCTGATTCAGGCTCTTGAGAATGCTAAGGAGGAGGCCAAGAAGAAGGCAGAGGAGGAAGCAAAGAAAAAAATTGAGGATGAGGAAGCTAATAAGGGGATGGGGCTTGGGGAAATATGGTCACAACTAGGCTCAATTATGGCTAGCATCATGTTTGTGTACGCCATGTTTGAGAGGTTCTTCCCACCACATCTTCATATCTATGTTCGAAAATACACACACAAACTCACAGGGCTCTTCTACCCTTATATCCAAATAACCTTCCCTGAGAATACAGGGGAAAAACTCAGAAGAAGTGAAGCTTACACTAAAATCCAAACATACCTCGGTGAGTACTCATCTCAAAGTGCCAAAAGACTTAAAGCTGAAGTGGTAAAAGATAGCCAATCCCCACTAGTTCTCAGTATGGATGACAATGAAGAGATCACAGATGAGTTTAAAGGTGTCAAACTCTGGTGGGCTGCACACTACAGCATCAATAAATCACAGTCATTTTCATTCTACCCTTCTTCAGATGAGAAGAGGTTCTTTAGACTCACTTTCCACAAACGGTACCGTGATCTCATCACTACTTCTTACATCCAACATGTGTTGGATGAAGGCAAGAAAATTGCATCAAGGAACAGACAGTTGAAACTGTACACCAACAACCCTAGCAACGATTGGTCTAGATACAAAAGCACAAAGTGGAGCCACATACATTTTGAGCACCCTGCAAGGTTTGAAACACTGGCTATGGATCCAAAGAAGAAGGAAGAGATTATAAACGACCTTGATAGAGGTTACCTACTTTATGGTCCACCAGGGACTGGGAAATCAACCATGATAGCTGCCATAGCTAATTTCATGAACTATGATGTATATGACCTTGAGTTGACAGCAGTCAAAGAGAATACTGACCTGAAAAGATTGTTGATTGAAACCTCCAGCAAATCGATCATAGTGATTGAAGACATTGACTGCTCTCTTGATCTAACAGGCCAGAGGAAACAGAAAAAGGAAATAGATGAGAATGAGGGTGAGAAAACCAAAAATCCTAAGAAGAAAGAAACAAGTGAGGATGATGAAGGGGTGAAAGATCCTGCTAAGAAAGCTGAAGAAGAAGAGAAAAAGGGCAGCAAGGTAACACTATCTGGGCTGTTGAATTTCATTGATGGGATTTGGTCAGCATGTGGGGGAGAGAGGATCATCATTTTCACAACCAATTTTGTGGATAAGCTTGACCCTGCTCTCATTAGGAGAGGGAGGATGGATAAGCACATAGAATTGTCCTATTGTTGCTTTGAAGCATTCAAGGTGCTTGCCATGAACTACTTGGATGTTGACTCACACCATTTGTTTGCTAGAATTGGGAATCTGTTGGAAGAGACCAATATGACACCTGCTGATGTTGCTGAGAATCTCATGCCTAAGTCTATTGATGAAGATGTAGAAACTTGCTTACAGAGTTTGATTACGGCTCTTGAGACGTCGAAAGAGGAAGCAAGGAAAAAGGCAGAAGAGGAAGCAGGGTTGAAGGAAGAGAAAGAGAAGGAAGGGCCTACACAGATGGAGGAGAAAATCAGTGAAAAAACCACAAAAGATGTGAAGGAGAATGGTTTTCATTGA 2814 0.4168 MGFGEIWSQLGSIMASIMFVYAMFERFFPPHLRIYLRKYTQKLTGLFYPYIQITFPENTGEKLRRSEAYTKIQTYLGEYSSQSAKRLKAEVVKDSQSPLVLSMDDNEEITDEFKGVKLWWAAHYSINKSQSFSFFPSSDEKRFFRLTFHKRYRDLITTSYIQHVLDEGKEIALRNRQLKLYTNNPSNDWFRYKSTKWSHIHFEHPARFETLAMDPKKKEEIINDLDIGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKENTELKKLLIETSSKSIIKAEEEEKKGSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVDKLDPALIRRGRMDMHIEMSYCSYEAFKVLAKNYLDVVDDSHSFFPIIEKLLGETNMSPADVAENLMPKSRTKDSDTSLKNLIQALENAKEEAKKKAEEEAKKKIEDEEANKGMGLGEIWSQLGSIMASIMFVYAMFERFFPPHLHIYVRKYTHKLTGLFYPYIQITFPENTGEKLRRSEAYTKIQTYLGEYSSQSAKRLKAEVVKDSQSPLVLSMDDNEEITDEFKGVKLWWAAHYSINKSQSFSFYPSSDEKRFFRLTFHKRYRDLITTSYIQHVLDEGKKIASRNRQLKLYTNNPSNDWSRYKSTKWSHIHFEHPARFETLAMDPKKKEEIINDLDRGYLLYGPPGTGKSTMIAAIANFMNYDVYDLELTAVKENTDLKRLLIETSSKSIIVIEDIDCSLDLTGQRKQKKEIDENEGEKTKNPKKKETSEDDEGVKDPAKKAEEEEKKGSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVDKLDPALIRRGRMDKHIELSYCCFEAFKVLAMNYLDVDSHHLFARIGNLLEETNMTPADVAENLMPKSIDEDVETCLQSLITALETSKEEARKKAEEEAGLKEEKEKEGPTQMEEKISEKTTKDVKENGFH* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1657 937 CDD AAA 228 343 - -
Lja2g1657 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 413 IPR027417 -
Lja2g1657 937 Coils Coil 394 433 - -
Lja2g1657 937 Gene3D - 630 822 IPR027417 -
Lja2g1657 937 ProSitePatterns AAA-protein family signature. 313 332 IPR003960 GO:0005524|GO:0016887
Lja2g1657 937 CDD AAA 662 722 - -
Lja2g1657 937 SMART AAA_5 660 829 IPR003593 -
Lja2g1657 937 SMART AAA_5 225 345 IPR003593 -
Lja2g1657 937 Pfam Domain associated at C-terminal with AAA 28 123 IPR025753 -
Lja2g1657 937 Pfam Domain associated at C-terminal with AAA 463 558 IPR025753 -
Lja2g1657 937 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 283 432 - -
Lja2g1657 937 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 440 921 - -
Lja2g1657 937 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 284 - -
Lja2g1657 937 ProSitePatterns AAA-protein family signature. 797 816 IPR003960 GO:0005524|GO:0016887
Lja2g1657 937 Gene3D - 193 339 IPR027417 -
Lja2g1657 937 MobiDBLite consensus disorder prediction 891 937 - -
Lja2g1657 937 Pfam ATPase family associated with various cellular activities (AAA) 230 342 IPR003959 GO:0005524|GO:0016887
Lja2g1657 937 Pfam ATPase family associated with various cellular activities (AAA) 665 728 IPR003959 GO:0005524|GO:0016887
Lja2g1657 937 Pfam ATPase family associated with various cellular activities (AAA) 766 826 IPR003959 GO:0005524|GO:0016887
Lja2g1657 937 Gene3D - 340 415 - -
Lja2g1657 937 Gene3D - 823 895 - -
Lja2g1657 937 PANTHER BCS1 AAA-TYPE ATPASE 283 432 - -
Lja2g1657 937 PANTHER BCS1 AAA-TYPE ATPASE 440 921 - -
Lja2g1657 937 PANTHER BCS1 AAA-TYPE ATPASE 5 284 - -
Lja2g1657 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 891 IPR027417 -
Lja2g1657 937 MobiDBLite consensus disorder prediction 732 772 - -
Lja2g1657 937 Coils Coil 883 914 - -
Lja2g1657 937 MobiDBLite consensus disorder prediction 892 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1657 Lja-Chr2 16518768 16559819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1657 228 345 Calmodulin-binding Proteins AT3G56690 27.941 2.27e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1657 - - gmx:100787917 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1657 2 16518768 16559819 Lja1g2905 1 35148806 35150419 PCT