Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1648 ATGGAAGCCGAAGAAGAAAATGTAGACCACACACTTCCTCAACCTACTCAATCTCACGGTCTCTCTCCCTTCTTAGGGTTCCGATTCATTATTGTGGCGACGGTCACCGGCTACCATGGATTGGAGCGGTTCAATCTCATCAAGCTGATTAACTATGCCGGCGGCAGTTACATCGGCTCCATGTCCAAATCAATAACCCACCTCAAGTTTGAAGGAAAGAAATATGATATTGCCAGAAGGCTTAGCATACCTGTAGTCAACCATCGCTGGATTGAAGATTGCATAAGGGAAGGAAAGCGCCTACCAATAGATTCTTATACCTTGCAAAGTGGACAAGAAGTAGGGCCATTGTTACTGGAAGTTCCAGCCTCCTTTGGACCGAACAGCTGGATAAAGAATAAAGTGGTTAGTGATGGGTTATGTGATATTGAGTCTGAAAGGCAAAATACAGTCATCAGTTTTGGAGCTCCCAGTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGTACGAGGAGACAAGTTTGCACTCATCTAGACGGCTAAAGAAGGTAAAAAGAAATATTTCCTGTGATAATGAAGTTAGTACTGCAGCTGGACCTTCTCGCAAGGAAAAAAAGTTTGTGAAAAAGGTTGTTGATGAAGTGGTGTCGGATCCTGTAATTTTGGATTTAAGCCCAGATGACCGGCTTTGCAGAATGGATAGAGATAGATTACACACTGAAGCTGCAGCTACCTCTAGCCTTTCTGGTGGTGTTGATGTTAACGATCTTCAAGAAAATAGTTCAGGACCTGATGCTAGATTATGCAATCAAAATAGAGCGATGAATGGAAGTTCAGATGGCATCGAACAGATCACAGATTCAAATCAAATAGAAGATCCCCAAACTGTGGAACAAACATCAATAGATTTATGTTCCAGTGATGGAAAGTTCATTGATGGTGATCAGGTTGATAATGTTGCTGGCTCTCCTATTTCAAATGAGTGGTCATGTGTTATATGTTTTGAAGATTTCAGTTCAACATTGGGGGTTTTGCCATGTGAACATACGTTTTGTTTGACATGCATCCAGAAATGGGCTCATCAAAGGATCTCAATGGGAAAAATATCAACCTGCCCTCTGTGCAAGGCCAGTTTTGCGTGGTACAAGATAGTTGAGCATGCAGCCACAGCTGATAAAGAATTAAACTCCCAGACAGTCCCATGTGACAATTTGGCCTCAGTTACTTTTATCTCCATGGATCAAGAATTACCAGATAATAGCTTTGAGGATGGCGCTTGTGTAGTTTGTCGTACTCGGGGCCCTGATGATCTCATTGAGACTTGCAATGTTTGTTGGACTCGAAGAATCCATTCCTACTGCATGGACCCCCCTACATATCCTTGGAAGTGGTACCCTCAAACTCACTCATGTTATATGTTCATGCATAATCTTGGCCTTTTGGGAATGTTTGTGCTATTACTTGCTAAACTCCTATAA 1479 0.4185 MEAEEENVDHTLPQPTQSHGLSPFLGFRFIIVATVTGYHGLERFNLIKLINYAGGSYIGSMSKSITHLKFEGKKYDIARRLSIPVVNHRWIEDCIREGKRLPIDSYTLQSGQEVGPLLLEVPASFGPNSWIKNKVVSDGLCDIESERQNTVISFGAPSYVLEDSCLMKKYEETSLHSSRRLKKVKRNISCDNEVSTAAGPSRKEKKFVKKVVDEVVSDPVILDLSPDDRLCRMDRDRLHTEAAATSSLSGGVDVNDLQENSSGPDARLCNQNRAMNGSSDGIEQITDSNQIEDPQTVEQTSIDLCSSDGKFIDGDQVDNVAGSPISNEWSCVICFEDFSSTLGVLPCEHTFCLTCIQKWAHQRISMGKISTCPLCKASFAWYKIVEHAATADKELNSQTVPCDNLASVTFISMDQELPDNSFEDGACVVCRTRGPDDLIETCNVCWTRRIHSYCMDPPTYPWKWYPQTHSCYMFMHNLGLLGMFVLLLAKLL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1648 492 SMART ring_2 331 375 IPR001841 -
Lja2g1648 492 Pfam twin BRCT domain 32 90 IPR001357 -
Lja2g1648 492 Gene3D BRCT domain 26 113 IPR036420 -
Lja2g1648 492 ProSiteProfiles BRCT domain profile. 19 108 IPR001357 -
Lja2g1648 492 Pfam Ring finger domain 330 376 IPR001841 -
Lja2g1648 492 ProSitePatterns Zinc finger RING-type signature. 347 356 IPR017907 -
Lja2g1648 492 ProSiteProfiles Zinc finger RING-type profile. 331 376 IPR001841 -
Lja2g1648 492 SUPERFAMILY RING/U-box 325 382 - -
Lja2g1648 492 PANTHER F5A8.9 PROTEIN 31 124 - -
Lja2g1648 492 PANTHER F5A8.9 PROTEIN 165 463 - -
Lja2g1648 492 SUPERFAMILY BRCT domain 22 109 IPR036420 -
Lja2g1648 492 SMART BRCT_7 21 98 IPR001357 -
Lja2g1648 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 423 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1648 Lja-Chr2 16390719 16396418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1648 49 114 Core DNA Replication Machinery Family AT4G02110 40.845 2.09e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1648 - - lja:Lj2g3v1034390.1 629.787