Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1640 ATGGGAGAAATAATGGCAGGAAGTGCAACTAAGGTTGCATTTATAGTCTTGGTAACTTTCTCCATTACCATTCCATGCCTTGTTGAGGCTGGCATTGCTGAGTTTGATGATTTTCTTAAAGAACAAGCTGATGAAGCCTATCAAATTGCTCTTGCTTCCTATGTGCCAAAGCCTGAAGAAGTTGCAGCTGAGCTTAACCTACACGTTCATTTGGCGTTGGAGCAGACAAACGACACAAGGAGGGAGCTAAGGCAGCGAGGAGGAGGAGGAGGAGGACGCCGCGGAAGAGGAAAACGCTGCGTCGCCACCAACCCCATCGACAAATGCTGGCGCTGCCGCAAAGACTGGGCCAACGACCGCTTCCGCCTCGCCAAGTGCGGCAAAGGCTTCGGCCGACGCGCCACCGGCGGCCTCGGCGGCCCAATCTACGTCGTCACCGACTCCTCCGACAACGACATGGTCAACCCAAAGCCCGGAACCCTCCGCTACGGCGTCGTCCAGAAAGGCCCACTGTGGATCATCTTCCAACGCAACATGGTCATCACGTTGAACCAGGAGCTTCTGGTTTCCTCCGACAAAACCATCGATGGCCGCGGCGCCAACGTTCAGATTCGCGACGGCGCCGGGATTACCATGCAGTTTGTGAACAATGTCATCATCCACGGGCTTCGCATCAAGAATGTGAAGTCTAAGCCTGGTGGTATGATGAGGGATTCTTGGAACCATGTTGGAACGAGAACAAGGAGTGATGGTGATGCTATCTCGATTTTTGGATCGTCGAACATTTGGGTTGATCATATTTCCATGTCTGATTGTGAGGATGGTCTTGTTGATGTTATTCAGGGTTCTACTGCAGTCACCATTTCGAATTGTCACATGACTAAGCATAACGATGTGATGCTGTTTGGAGCTAGCGATTCGTACAACGGGGATAAGATTATGCAGGTGACGTTGGCGTTCAACCACTTCGGTCAAGGGTTGATTCAGAGGATGCCGAGGTGTAGGTGGGGTTTTGTTCATGTTTTGAACAATGACTATACTCATTGGATGATGTATGCGATTGGTGGTAGCTCGGGGCCGACGATTTTGAGCCAGGGGAATCGTTTCATTGCTCCGAACAATGATGCTGCCAAGGTGATCACGCACAGGGACTATGCAGGACCTGATGTGTGGAAGCATTGGCAGTGGCAATCGGAGATGGACCTGTTCATGAATGGTGCTAAGTTTATTCCTTCAGGGGCGCCGATTAGTAGGGGTTCGTTCAAGAAAGGGTTGATGATGAAACCAAGAGATGGGTCTCATGTCAGCAGGCTAACAAAGAATGCTGGTGCCCTTCCTTGCAGGGTAGGCAAGCCTTGTTAG 1362 0.5103 MGEIMAGSATKVAFIVLVTFSITIPCLVEAGIAEFDDFLKEQADEAYQIALASYVPKPEEVAAELNLHVHLALEQTNDTRRELRQRGGGGGGRRGRGKRCVATNPIDKCWRCRKDWANDRFRLAKCGKGFGRRATGGLGGPIYVVTDSSDNDMVNPKPGTLRYGVVQKGPLWIIFQRNMVITLNQELLVSSDKTIDGRGANVQIRDGAGITMQFVNNVIIHGLRIKNVKSKPGGMMRDSWNHVGTRTRSDGDAISIFGSSNIWVDHISMSDCEDGLVDVIQGSTAVTISNCHMTKHNDVMLFGASDSYNGDKIMQVTLAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDAAKVITHRDYAGPDVWKHWQWQSEMDLFMNGAKFIPSGAPISRGSFKKGLMMKPRDGSHVSRLTKNAGALPCRVGKPC* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1640 453 SMART amb_all 178 375 IPR002022 -
Lja2g1640 453 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Lja2g1640 453 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Lja2g1640 453 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Lja2g1640 453 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Lja2g1640 453 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Lja2g1640 453 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Lja2g1640 453 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Lja2g1640 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Lja2g1640 453 PANTHER PECTATE LYASE 18-RELATED 9 453 IPR045032 GO:0030570
Lja2g1640 453 Pfam Pectate lyase 187 369 IPR002022 -
Lja2g1640 453 SUPERFAMILY Pectin lyase-like 104 444 IPR011050 -
Lja2g1640 453 MobiDBLite consensus disorder prediction 78 98 - -
Lja2g1640 453 Pfam Pectate lyase, N terminus 32 83 IPR007524 GO:0030570
Lja2g1640 453 PANTHER PECTATE LYASE 9 453 - -
Lja2g1640 453 Gene3D - 103 446 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1640 Lja-Chr2 16319169 16321666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1640 16 453 Polysaccharide Lyase AT5G15110 54.176 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1640 K01728 - gmx:100785801 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1640 2 16319169 16321666 Lja1g5490 1 93973020 93977501 ECH
Lja2g1640 2 16319169 16321666 Lja4g2172 4 23402482 23404959 ECH
Lja2g1640 2 16319169 16321666 Lja2g1640 2 16319169 16321666 ECH
Lja1g2894 1 34969781 34971956 Lja2g1640 2 16319169 16321666 ECH
Lja2g1110 2 10525568 10527945 Lja2g1640 2 16319169 16321666 ECH