Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1639 ATGACAGACGGTGGTCACCTCTTCAACAACATCACCCTCGGCGGCCGCGGCGGCACGAATCCAGGGCAGATAAAAATATTCTCTGGAGGAATTGCATGGAAAAGACAGGGGGGTGGTAAATCAATTGAGATTGATAAAGCTGATATAATGGGGGTCACATGGATGAAAGTTCCAAGGACTAATCAGCTTGGTGTTCAGATCAAAGATGGGCTGTACTACAAATTTACTGGATTCCGTGATCAGGATGTTGTAAGCTTGACCAGTTTTTTCCAAAATAACTTTGGAATATCTGTAGATGAGAAGCAGCTTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCATTCATGGTTGGTTCAAAGCAATCTTTCGAGGTGTCTTTAGCTGATGTCTCTCAAACGACGCTTCAAGGGAAAAATGATGTGATGTTGGAGTTCCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCATTGATGGAGTTAAGTTTCCATATACCAAATTCCAATACCCAGTATGTTGGCGATGAAAATCATACTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTCGGTGCTGGAGGTGAAGATTCTGTTGTTACATTTGATGGTATTGCAGTCCTTACACCAAGAGGACGTTACAGTGTTGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTTAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCCAATCAGCCACATACTTTTGTCATTGTTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATGTTGTTTTTCAAAGTGAATTGGCAATAAACGAAGATCTTTATAACACTAAGTACAAGGACAAGTTGGAGCTGTCTTATAAGGGGCTAATCCATGAAGTGTTCACCACAATATTACGTGGCTTATCTGGGGCTAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCTAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTTTTCCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGGTTGACTATGTAGAATTTGAGCGACATGCTGCCGGTGGTTCAAATATGCATTATTTTGACCTTCTTATCAGATTAAAATCTGAGCAAGAGCATCTCTTCCGCAATATTCAGAGAAATGAATACCATAATTTGTATAGTTTTATCAGGGAAAAGGGCTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGTATGGCTCAAGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGATGAGGAGGATGAAGATTTTGTTCTTGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGGGGGGATGATTCTGATGGTAGTGATAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAGGAACCAAAGAAGGATCTGCCTTCTAAGGCATCTACTTCTAAGAAGAAGCCAAGAGATGCTGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCGCAAATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTTGGGAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAACGGAGGAGAAAGAACCATATGAGGTAAAAGCCCGTGCCGATAAGAAACGGTATATGGATGAGATTAGTGGCTACAAGAATCCACAACCGATGAATGTTGATTCAGGAAATGAATCTGACAGTCCCTAA 1929 0.408 MTDGGHLFNNITLGGRGGTNPGQIKIFSGGIAWKRQGGGKSIEIDKADIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVVSLTSFFQNNFGISVDEKQLSVSGRNWGEVDLNGNMLAFMVGSKQSFEVSLADVSQTTLQGKNDVMLEFHVDDTTGANEKDSLMELSFHIPNSNTQYVGDENHTPAQVFRDKIMSMADVGAGGEDSVVTFDGIAVLTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIVSLDPPIRKGQTLYPHIVMQFETDVVFQSELAINEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCLDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEVDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYSFIREKGLKIMNLGGAQPTVGMAQVLENDDDDAVDPHLERIKNEAGGDESDEEDEDFVLDKDDGGSPTDDSGGDDSDGSDSGDEKEKPAKKEPKKDLPSKASTSKKKPRDADEDGKKKKQKKKKDPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARADKKRYMDEISGYKNPQPMNVDSGNESDSP* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1639 642 PRINTS Structure-specific recognition protein signature 401 417 IPR000969 GO:0003677|GO:0005634
Lja2g1639 642 PRINTS Structure-specific recognition protein signature 265 281 IPR000969 GO:0003677|GO:0005634
Lja2g1639 642 PRINTS Structure-specific recognition protein signature 357 375 IPR000969 GO:0003677|GO:0005634
Lja2g1639 642 PRINTS Structure-specific recognition protein signature 417 435 IPR000969 GO:0003677|GO:0005634
Lja2g1639 642 PRINTS Structure-specific recognition protein signature 242 258 IPR000969 GO:0003677|GO:0005634
Lja2g1639 642 PRINTS Structure-specific recognition protein signature 375 392 IPR000969 GO:0003677|GO:0005634
Lja2g1639 642 PRINTS Structure-specific recognition protein signature 220 236 IPR000969 GO:0003677|GO:0005634
Lja2g1639 642 PRINTS Structure-specific recognition protein signature 330 343 IPR000969 GO:0003677|GO:0005634
Lja2g1639 642 Pfam Structure-specific recognition protein (SSRP1) 107 175 IPR024954 -
Lja2g1639 642 Gene3D - 96 180 IPR038167 -
Lja2g1639 642 CDD PH2_SSRP1-like 343 442 - -
Lja2g1639 642 MobiDBLite consensus disorder prediction 628 642 - -
Lja2g1639 642 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 640 - -
Lja2g1639 642 Gene3D - 340 447 IPR011993 -
Lja2g1639 642 Gene3D - 5 94 IPR011993 -
Lja2g1639 642 Pfam Histone chaperone Rttp106-like 351 440 IPR013719 -
Lja2g1639 642 MobiDBLite consensus disorder prediction 507 549 - -
Lja2g1639 642 Pfam HMG (high mobility group) box 558 626 IPR009071 -
Lja2g1639 642 Gene3D - 200 339 - -
Lja2g1639 642 Gene3D High mobility group box domain 541 636 IPR036910 -
Lja2g1639 642 CDD PH1_SSRP1-like 208 341 - -
Lja2g1639 642 Pfam POB3-like N-terminal PH domain 8 99 IPR035417 -
Lja2g1639 642 SUPERFAMILY HMG-box 545 627 IPR036910 -
Lja2g1639 642 CDD HMGB-UBF_HMG-box 558 623 - -
Lja2g1639 642 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 640 - -
Lja2g1639 642 SMART Rtt106_2 349 442 IPR013719 -
Lja2g1639 642 MobiDBLite consensus disorder prediction 620 642 - -
Lja2g1639 642 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 558 626 IPR009071 -
Lja2g1639 642 SUPERFAMILY PH domain-like 207 441 - -
Lja2g1639 642 SMART hmgende2 557 627 IPR009071 -
Lja2g1639 642 MobiDBLite consensus disorder prediction 469 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1639 Lja-Chr2 16312113 16317492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1639 554 626 ARID Transcription Factor Family AT1G04880 39.726 1.61e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lja2g1639 POB3_N 3.2e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1639 K09272 - gmx:100805034 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1639 2 16312113 16317492 Lja2g1639 2 16312113 16317492 ECH