Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1637 ATGGAAATAGTGATAAAGCATGAAGAGAACAAGAGGAAGAGCTGGATGTCCATGGCGGAAGAAGTGTTTAAAGTAGCTCCGGGTGCCAAGAGACGGCGAAGAGAGCCTCCTCCAGCTGATAACAAAGGTCAAAAGCAACAGTTGATGCCACAGCAACAAGTTGAACAAAATTCTACTACCAACACTACTACAAAGAGAAGTTCAAGATTTAGGGGTGTCAGCAGACATAGATGGACGGGTAGATATGAAGCACACTTATGGGACAAGCTCTCTTGGAACATGACCCAAAAGAAGAAAGGGAAGCAAGTTTACCTTGGGGCTTATGATGAAGAAGAATCAGCAGCCAGAGCATATGATCTAGCTGCACTGAAGTACTGGGGAACATCAACTTTCACCAATTTTCCTATTTCAGATTATGAGAAACAGATAGAGATAATGCAAACTATGACAAAAGAGGAGTACTTGGCTACTCTAAGGAGAAAGAGTAGTGGCTTTTCAAGAGGTGCATCAAAGTATAGGGGTGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGGATTGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACCTATAGGACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCGGCCATCGAGTGCAGAGGGATCAGTGCTGTGACCAATTTCGACTTGAGTACTTACATAAGATGGTTAAATCTTTCAGCAGGAAATATCTCAGAAACAAAACTAGAACCAACAGTAGTACAGGAGTCTCAGACAGTGGCAAACACAGAAGGGTACAAATCCTTGGCCATTAACAGCTCTACTTACAATTCGGAGTATCTGAATTCCCCTCAAAAGCATGAAGTGTTCGAGAACAAAACATACCAATTCTCCAGCCCTAACTCATCTTCTCCAACTGCACTTGGGCTCCTTCTTCGCTCTACAGTATTCAGAGAATTGGTTGAAAAGAATTTGAACATATCTGAGGATGAAACTGATGGGGAAGACACAAAAGATCAACAGCCGCATGCAGCTAGTGATGATGAGTTGGCTGGGATCTTTCATGATGGAACTGGTCATATATCACCTTTCTGTAATCCCAACAGAGACAACTTAGAAATGCAAGGAGACATGCAGTCCAGTTTATTAAAGAGAAGTGTCAGCCCTCAAAGTCAAGGTGCAAAAGTGCTAGATAATCCACACTACCATTGCTGA 1215 0.4305 MEIVIKHEENKRKSWMSMAEEVFKVAPGAKRRRREPPPADNKGQKQQLMPQQQVEQNSTTNTTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNMTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKQIEIMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYRTQEEAARAYDIAAIECRGISAVTNFDLSTYIRWLNLSAGNISETKLEPTVVQESQTVANTEGYKSLAINSSTYNSEYLNSPQKHEVFENKTYQFSSPNSSSPTALGLLLRSTVFRELVEKNLNISEDETDGEDTKDQQPHAASDDELAGIFHDGTGHISPFCNPNRDNLEMQGDMQSSLLKRSVSPQSQGAKVLDNPHYHC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1637 404 MobiDBLite consensus disorder prediction 378 404 - -
Lja2g1637 404 PRINTS Ethylene responsive element binding protein signature 211 231 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 MobiDBLite consensus disorder prediction 24 72 - -
Lja2g1637 404 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 372 - -
Lja2g1637 404 CDD AP2 68 137 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 372 - -
Lja2g1637 404 MobiDBLite consensus disorder prediction 44 68 - -
Lja2g1637 404 MobiDBLite consensus disorder prediction 25 40 - -
Lja2g1637 404 CDD AP2 170 231 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 SUPERFAMILY DNA-binding domain 170 231 IPR016177 GO:0003677
Lja2g1637 404 SUPERFAMILY DNA-binding domain 68 137 IPR016177 GO:0003677
Lja2g1637 404 ProSiteProfiles AP2/ERF domain profile. 171 229 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 Pfam AP2 domain 68 127 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 Pfam AP2 domain 170 220 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 ProSiteProfiles AP2/ERF domain profile. 69 135 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 MobiDBLite consensus disorder prediction 378 395 - -
Lja2g1637 404 SMART rav1_2 171 235 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 SMART rav1_2 69 141 IPR001471 GO:0003700|GO:0006355
Lja2g1637 404 Gene3D AP2/ERF domain 170 231 IPR036955 GO:0003700|GO:0006355
Lja2g1637 404 Gene3D AP2/ERF domain 68 137 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1637 Lja-Chr2 16304209 16306936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1637 44 277 AP2-EREBP Transcription Factor Family AT5G57390 55.785 3.27e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja2g1637 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1637 - - ahf:112716370 521.161