Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1628 ATGAATGATCCATATATATCATCAATCTTCACTATTATCTCTTCTCCTTTCACCATGGCCTTTCCACCTTCTCACACCTTCCTTTTCCACAATGAAGATCACCACAACCTCCTCCGTTCAACTTCAACCTCTCTCAACGCCTTCCCTTCTTTCCCACCCCAACAACCACACTTTCAAGGTGGTGGTGGGGGTGCAGCGTTCATGATGAAGCGATCGGTGTCGTTTTCAGGCTTAGAGATGAACAACAACAAGTGCGATGAAGTGCTGCATGGCGGAGACGATGATTTGTCCGATGATGGGTCCCAGCTAGGGGAGAAGAAGAAGAGGCTGAGTCTGGAGCAGGTAAAGGCGCTTGAGAGGAGCTTCGAGCTCGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAGCTGGCTAAGGCTTTGGGGTTGCAGCCCAGGCAGATCGCTATATGGTTCCAGAACAGGAGGGCTAGGTGGAAGACAAAGCATCTTGAGAAGGAGTATGAAGTGCTCAAGAAGCAGTTTGAAGCTGTTAAGGCTGATAATGATAACCTTAAGGCCCAGAACCATAAACTTCATGCAGAGTTACAATCTCTTAAAAATAGGGAATGCTGTGAAACTGGAACAATAAGTTTCAAAAAAGAAAATGAGGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGACATCAATTTGGAACCCTCAAGAACACCAATGATGAACAGTCCTGCTGTATCTTCTGATCAGAATGGTAAGAATCTTCTACCAACTTCACTAAAACCCACCAGCATAACTCAGCTTCTCCAATGCTCATCAAGAACAGATCTTCAAGATGAAAGCTTCTCCAACATGTTTCACAGCATTGATGATCAGCAGCAGAATTTTTGGCCCTGGCCTGAGCAGCACCATAATTTTCATTGA 918 0.4542 MNDPYISSIFTIISSPFTMAFPPSHTFLFHNEDHHNLLRSTSTSLNAFPSFPPQQPHFQGGGGGAAFMMKRSVSFSGLEMNNNKCDEVLHGGDDDLSDDGSQLGEKKKRLSLEQVKALERSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKHLEKEYEVLKKQFEAVKADNDNLKAQNHKLHAELQSLKNRECCETGTISFKKENEGSWSNGSDNSSDINLEPSRTPMMNSPAVSSDQNGKNLLPTSLKPTSITQLLQCSSRTDLQDESFSNMFHSIDDQQQNFWPWPEQHHNFH* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1628 305 SMART HOX_1 104 165 IPR001356 GO:0003677
Lja2g1628 305 Pfam Homeodomain 106 159 IPR001356 GO:0003677
Lja2g1628 305 Gene3D - 98 176 - -
Lja2g1628 305 SUPERFAMILY Homeodomain-like 98 162 IPR009057 -
Lja2g1628 305 MobiDBLite consensus disorder prediction 214 252 - -
Lja2g1628 305 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Lja2g1628 305 Coils Coil 153 201 - -
Lja2g1628 305 CDD homeodomain 106 162 IPR001356 GO:0003677
Lja2g1628 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 305 IPR045224 GO:0003700
Lja2g1628 305 PRINTS Lambda-repressor HTH signature 141 157 IPR000047 GO:0003677
Lja2g1628 305 PRINTS Lambda-repressor HTH signature 132 141 IPR000047 GO:0003677
Lja2g1628 305 Pfam Homeobox associated leucine zipper 161 201 IPR003106 GO:0006355|GO:0043565
Lja2g1628 305 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Lja2g1628 305 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 19 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1628 Lja-Chr2 16225257 16228049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1628 19 299 Homeobox Transcription Factor Family AT5G15150 47.883 2.02e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja2g1628 Homeodomain 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1628 K09338 - gmx:100790803 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1628 2 16225257 16228049 Lja2g1628 2 16225257 16228049 ECH
Lja2g1628 2 16225257 16228049 Lja1g2874 1 34631824 34634407 PCT