LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g1626	ATGTCTAGCAGAAGGTCGAGGCAGCAATCTTCATCTACGAGGATCTCCGATGACCAAATCATCGAACTTGTTTCGAAGTTGCGTCAACTTGTTCCTGAGATTCGAGATAGGCGTTCTGACAAGGTATCAGCATCTAAAGTCCTGCATGAGACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGGATGATTTAAGTGAAAGGTTGTCTCAGTTATTGGCCTCAATTGATGGTGATAGTCCTGAGGCTGCTATTATCAGGAGCCTAATTAACCAATAA	279	0.4409	MSSRRSRQQSSSTRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDSPEAAIIRSLINQ*	93

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g1626	92	Coils	Coil	55	75	-	-
	Lja2g1626	92	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	4	58	IPR011598	GO:0046983
	Lja2g1626	92	CDD	bHLH_AtPRE_like	14	75	-	-
	Lja2g1626	92	Gene3D	-	2	80	IPR036638	GO:0046983
	Lja2g1626	92	PANTHER	TRANSCRIPTION REGULATOR	1	90	-	-
	Lja2g1626	92	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	20	77	IPR036638	GO:0046983
	Lja2g1626	92	PANTHER	TRANSCRIPTION FACTOR PRE	1	90	IPR044293	GO:0006355\|GO:0040008\|GO:0046983
	Lja2g1626	92	Pfam	Helix-loop-helix DNA-binding domain	22	59	IPR011598	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g1626	Lja-Chr2	16171823	16174051	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g1626	12	90	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G39860	75.000	1.06e-36	117

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Lja2g1626		HLH	0.00015	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g1626	-		-	gmx:100794486	146.362

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g1626	2	16171823	16174051	Lja1g5503	1	94519021	94520673	ECH
	Lja2g1626	2	16171823	16174051	Lja2g1626	2	16171823	16174051	ECH
	Lja2g1127	2	10751933	10753171	Lja2g1626	2	16171823	16174051	ECH