Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1618 ATGGGATCTTGTGGTTTGTCTAGAGGGTTGACTTTGTTATCATGTGTGGTTTGCAAGGTGAGTTCTCCTTATGAGAACAGTTACCACCATGGGGATCAGGTGGATTCTGGTAATTTTGCATTTACTGCAGCTGAGGACGGCGACTACACAGCTTGCTTTTGGATACCGGATAGTAGGGCCGGTGTCTCAATTGTGACCATTGAATTCGATTGGAGAACTGGGGTTGCTGCCAAAGACTGGTCCAAGGTTGCCAAGAAAGGGCAGGTTGAAGTAATGGAATTTGAGTTGAAGAAGCTATATGATACAGTTGCATCCATCCATGAGGAGATGTTTTATCTTCGCGAAAGACTGATACCGGACGGTTTAGTGTTGACCGTGCCACAAGATGGAACCGGACACTACCGGACGGTGCAGGAAGCCATTGATGCAGTGCCACTCGGCAACACTCGCCGGACGGTGATTCGGGTGTCGCTTGGAATCTACAGACAGCCACTGTACGTGGCCAAGACCAAGAAGTTCATCACCTTTGTTGGTGTGCGCCCTGAGGACACTGTTTTTACATGGAACAACACTGCCACCAGAATCGAGCACCACCAAGGTGATCGGGTAATAGGGACAGGAACCTTTGGTTGCGGAAGCATCATTGTGGCAGGAGAGGACTTTATTGCTGAGAACATTACTTTTGAGAATTCTTCCCCTGAGGGTTCAGGGCAAGCAGTGGCAGTCAGGGTAACAGCAGACAGATGTGCATTCTATGATTGCAGATTCCTTGGTTGGCAGGACACACTGTATTTGCATTATGGCAAACAATATCTGAAAGATTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAGCATTGTCATATCCACTGCAAGTCTGCAGGGTTCATAACTGCACAGAGCAGAAAATCTCCACAGGAAACAACCGGTTATGTATTTCTGAGATGTGTTATCACAGGTAACGGAGGAACTTCATATTCATATCTTGGACGACCATGGGGACCTTTTGGAAGAGTTGTCTTTGCATTTACTTACATGGATCAATGTATAAAGCATGTTGGTTGGAATAATTGGGGAAAATTTGAGAATGAAAGAAGTGCTTGCTTCTATGTATACAGGTGCTTTGGACCGGGTTGCTGTCCATCCAAACGAGTAAAGTGGGCTAGACAATTAATGGATAAAGAAGCAGAACAGTTTCTCATGCATGGCTTCATTGACCCTGAACCAAAGAGAGGCTTGCTCAAAGAATGGCCTTGA 1281 0.4575 MGSCGLSRGLTLLSCVVCKVSSPYENSYHHGDQVDSGNFAFTAAEDGDYTACFWIPDSRAGVSIVTIEFDWRTGVAAKDWSKVAKKGQVEVMEFELKKLYDTVASIHEEMFYLRERLIPDGLVLTVPQDGTGHYRTVQEAIDAVPLGNTRRTVIRVSLGIYRQPLYVAKTKKFITFVGVRPEDTVFTWNNTATRIEHHQGDRVIGTGTFGCGSIIVAGEDFIAENITFENSSPEGSGQAVAVRVTADRCAFYDCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPQETTGYVFLRCVITGNGGTSYSYLGRPWGPFGRVVFAFTYMDQCIKHVGWNNWGKFENERSACFYVYRCFGPGCCPSKRVKWARQLMDKEAEQFLMHGFIDPEPKRGLLKEWP* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1618 426 Pfam emp24/gp25L/p24 family/GOLD 19 116 IPR009038 -
Lja2g1618 426 PANTHER PECTINESTERASE 122 420 - -
Lja2g1618 426 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 122 420 - -
Lja2g1618 426 SUPERFAMILY Pectin lyase-like 122 415 IPR011050 -
Lja2g1618 426 SMART EMP24_GP25L_2 1 175 IPR009038 -
Lja2g1618 426 Gene3D - 122 420 IPR012334 -
Lja2g1618 426 Pfam Pectinesterase 125 414 IPR000070 GO:0030599|GO:0042545
Lja2g1618 426 ProSiteProfiles GOLD domain profile. 1 98 IPR009038 -
Lja2g1618 426 ProSitePatterns Pectinesterase signature 2. 277 286 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1618 Lja-Chr2 16051809 16057375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1618 114 414 Carbohydrate Esterase AT5G47500 36.774 9.81e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1618 K01051 - rcu:8283426 553.518